NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001818

3300001818: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM19, ROCA_DNA029_2.0um_3a



Overview

Basic Information
IMG/M Taxon OID3300001818 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0096913 | Gp0056130 | Ga0016826
Sample NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM19, ROCA_DNA029_2.0um_3a
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5833884
Sequencing Scaffolds30
Novel Protein Genes31
Associated Families30

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → Viruses → Predicted Viral8
All Organisms → cellular organisms → Eukaryota1
Not Available10
All Organisms → Viruses3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C221
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED951
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → plume front → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)7.2875Long. (o)-53.0005Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001971Metagenome / Metatranscriptome609Y
F002197Metagenome / Metatranscriptome584Y
F002907Metagenome / Metatranscriptome521Y
F004546Metagenome / Metatranscriptome433Y
F004898Metagenome / Metatranscriptome419Y
F005478Metagenome / Metatranscriptome399Y
F005629Metagenome / Metatranscriptome394Y
F008422Metagenome / Metatranscriptome333Y
F018020Metagenome / Metatranscriptome237Y
F018707Metagenome / Metatranscriptome233N
F023556Metagenome / Metatranscriptome209N
F027181Metagenome / Metatranscriptome195Y
F031863Metagenome / Metatranscriptome181Y
F039653Metagenome / Metatranscriptome163Y
F043368Metagenome / Metatranscriptome156N
F046343Metagenome / Metatranscriptome151Y
F052453Metagenome / Metatranscriptome142Y
F052601Metagenome142N
F056566Metagenome / Metatranscriptome137N
F059025Metagenome / Metatranscriptome134Y
F060869Metagenome / Metatranscriptome132Y
F064623Metagenome / Metatranscriptome128N
F066589Metagenome / Metatranscriptome126Y
F077050Metagenome117Y
F079773Metagenome / Metatranscriptome115Y
F095500Metagenome / Metatranscriptome105Y
F095589Metagenome / Metatranscriptome105Y
F097147Metagenome104Y
F099331Metagenome / Metatranscriptome103Y
F103169Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ACM19_100081All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium4359Open in IMG/M
ACM19_100150All Organisms → Viruses → Predicted Viral2293Open in IMG/M
ACM19_100153All Organisms → Viruses → Predicted Viral2735Open in IMG/M
ACM19_100325All Organisms → Viruses → Predicted Viral1067Open in IMG/M
ACM19_100433All Organisms → cellular organisms → Eukaryota618Open in IMG/M
ACM19_100454All Organisms → Viruses → Predicted Viral2169Open in IMG/M
ACM19_100698All Organisms → Viruses → Predicted Viral1166Open in IMG/M
ACM19_100743All Organisms → Viruses → Predicted Viral2082Open in IMG/M
ACM19_100766Not Available521Open in IMG/M
ACM19_100844Not Available721Open in IMG/M
ACM19_101372Not Available608Open in IMG/M
ACM19_101511All Organisms → Viruses1348Open in IMG/M
ACM19_101524Not Available680Open in IMG/M
ACM19_101547Not Available515Open in IMG/M
ACM19_102014Not Available603Open in IMG/M
ACM19_102034All Organisms → Viruses → Predicted Viral1275Open in IMG/M
ACM19_102047All Organisms → Viruses → Predicted Viral1215Open in IMG/M
ACM19_102075Not Available527Open in IMG/M
ACM19_102292All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae891Open in IMG/M
ACM19_102576All Organisms → Viruses539Open in IMG/M
ACM19_102956All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01549Open in IMG/M
ACM19_103177All Organisms → Viruses848Open in IMG/M
ACM19_103822Not Available1033Open in IMG/M
ACM19_104403Not Available590Open in IMG/M
ACM19_104574All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales596Open in IMG/M
ACM19_105020All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C22802Open in IMG/M
ACM19_106154All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium764Open in IMG/M
ACM19_106828All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED95527Open in IMG/M
ACM19_107583Not Available522Open in IMG/M
ACM19_107931All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea657Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ACM19_100081ACM19_1000816F095589MEDREDVKEQIYKKICEATILQYKSDSKDIESHELDTEGAEVVDE*
ACM19_100150ACM19_1001501F023556MNIFTLKNIMKEVNAPNTFQGVPSDKPNGDRYEFYHPLYWIFKVENMRIKTLDSRLTEKRKPHARFDVFMYLLTDDSQGELFVRSQDYVYEQVGNDFYVKMKRDNFPLEDRNGDPWSFSTDDRIF
ACM19_100153ACM19_1001537F043368MTNGASQSFKKRILEECKKLTNEGKHIEASHLFRTYFPDFESPLPERLDNFYV*
ACM19_100325ACM19_1003253F005629MKKQISESSFYIRRTWTDFVGRTVKVDHVGPYMENQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFN*
ACM19_100433ACM19_1004331F018020GDGNTEKVSMILSGYSSLILEIRRVPIPDPVPPPREWVI*
ACM19_100454ACM19_1004543F099331LQEGKKIKKRVTKKGVSKEISNSTLVVASDGSFNQQTASNALKKVLVQIIEDLL*
ACM19_100698ACM19_1006982F064623ASSQLFKIINGLGVESNRDHFHQGINFGRCKHTLYPPVYEEIEKAIFVMGDPVQSIISIFRRDMAVTHIENKGLPLHPTRTDNVEIHPTTKEIYRVHPQFVKNYTLEEYVRGGQDWFMTYEHIYNWTQRETKYPVLRVKSDVQWKYGKEIFVDFLGQESVPLEYVQRDRNSTIDLVPENMKEEFTSILKEATELYNSLPEF
ACM19_100743ACM19_1007436F005478MIEYNSVQRISTRLMYDDYDLDYTFVSDYTLDEDTYYEMGGLDLDEEYARDTQDYDTLAYRHYA*
ACM19_100766ACM19_1007662F004546MSKQTLEEEFPFDEFPWKLIYKDGKETRKCYFQSEDHRKKHVERYKLKKKDIQLSYKYDE
ACM19_100844ACM19_1008441F095500AAYTNFQNNLQPIPFSFTSSFFEEYVRTAIDGVEADLIAAEGGTLQSKKAALSYYNKNGEILIPNNYFTASYQAIDYANLLVQQILINESVTGSSDVTRLYQESVTQSIDNSLIAESGSISASVDLLNAISNTISNPTRVEQAPVDLITNVEIPAGDSLSPIVAGKLVLEQQFSLIVSGSTDLTVILSILESANE*
ACM19_100876ACM19_1008767F052453MSVLSTHSPIARLTPHTKTMNKQPDFAAIMAAYTQQHNAMMARSAANRKAFAEGRPFPFPAPEGQSTTWHISDRD*
ACM19_101372ACM19_1013722F103169MTSTDNLLQIAADLNAAGKTVKMTVLPTRKPKKSELVFSMTKGPRTNTNRRGQAYAGHATPSRDLTVEGNRAAYFKTSG*
ACM19_101511ACM19_1015112F018707MKKRPLANVEWRKYFSLNNTTLNEYLHDYGDDFLNQSLSLIIQAHKQNLPSIVLIEFTIDGVVSVIEKKDYLLVLQRLLNLCERMEKYEICAEIVKYQKSIPPKIKTPTKKSHKITTLK*
ACM19_101524ACM19_1015241F056566INCNDSPSVWTLRLNPITGTARVRWFNGPLAEYRHTGVSRRAILKMLWFSGDTSKGQWVNCHCLAQ*
ACM19_101547ACM19_1015471F027181HPPKLYEVTLSSGTMHLLAPDSESAAWMALELSHERDDKLVNVRQADEW*
ACM19_102014ACM19_1020141F008422MNYQKGDVFLDKDTHKLYIFDGKEWWEIVPSSYLKKPDWT*
ACM19_102034ACM19_1020342F004898MDLSELIEELREIEIYDTDPQDWMGYLKEDDYWVTDPELAY*
ACM19_102047ACM19_1020473F066589MEDDFLYEQDFDENLPYISMDMGIEDVRQIHESISLHLQNWVSCPDKKERLEGLKDFLER
ACM19_102075ACM19_1020752F002197MYSLKILAPXXXXXXXXGLTTGQGDHCVIDNKPPNVVKYYEPGKSCYVNGTFYQKCEERNGSI*
ACM19_102292ACM19_1022924F001971MMTYEEFIHKGTDFYMDMVRLIDIKLKYRMSLTDNEKEMQDHILEFQKQIKINELRDRFEKCWEVDE*
ACM19_102576ACM19_1025762F046343MTLPKTSVGALTEEEILELSALKEAITYRPASVSAKKMEKFAELMVRSLEGNNPN*
ACM19_102956ACM19_1029562F097147ELCVDKIETLEDIKKILDIMKVRIDTDNPDWEKAEDYFCLEVVPKGYFKLLKKIGHEGIAKLHYHEIEQQALELLNEDGK*
ACM19_103177ACM19_1031774F002907MTKQNPYWFFEKWGVHEPSPLEVLEQKVQELEDKVRLLEEEMTGQSDALIDILAEHKTDV
ACM19_103822ACM19_1038222F031863LDIKDTMNNKFLEVGNDLFVVKRKFKIENFEKVVKHFGAKEVCENYHCETIFRGRDGYFYLCDKVDDAKIIE*
ACM19_104403ACM19_1044032F077050MADFRIKLNRANNYTVTQEKTVVAEFLSDLADVSVSDLPSKDNYVLTYNASLQKYELVPADKVLENSASDSDIPXXXXXXXXXXXXNEIDVDGGGF*
ACM19_104574ACM19_1045742F002907VKQNPYWFFQKWGIDEPTPLEILTEKVKELEDKVRLLEDEMIGQTNALYECWNSLDARIDIMAQKMRTE*
ACM19_105020ACM19_1050202F079773MTDANVNLNVHEIGIILSALQLLQHRDENLIAREYG*
ACM19_106154ACM19_1061542F059025MANHYFKQMDTYFKLVDETNEVISVTTNFTNKCAALSVLTEPDGIEIITEGVYEAQKVQVKDYIIENL*
ACM19_106828ACM19_1068282F060869MAINLGLLDYMPLPQMPFDKVPTEKQRIVEESYKAIDKRANQFKNESIYAYHPHNQNKVPQGQIVDFVVA*
ACM19_107583ACM19_1075831F052601MYNLYMGFICNVLRINKIICMNYEIEIEYYDQDGCIFYIGETPYEVELYIETRIYNSFTDTIKYVQFEERYYRVDQTTLRCDGINYYDEEDICEQLEEILNG*
ACM19_107931ACM19_1079312F039653VLVKFAFFGFLKVLLTIQLEPTFYFVYPFLTIGVCDAVFKLFYQIDLKKLVAYSTVVEMH
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