NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003795

3300003795: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08



Overview

Basic Information
IMG/M Taxon OID3300003795 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110170 | Gp0088315 | Ga0007853
Sample NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33494381
Sequencing Scaffolds44
Novel Protein Genes50
Associated Families43

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage18
Not Available15
All Organisms → cellular organisms → Bacteria4
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001774Metagenome / Metatranscriptome636Y
F006264Metagenome / Metatranscriptome377Y
F007405Metagenome351Y
F009598Metagenome / Metatranscriptome315Y
F010616Metagenome / Metatranscriptome301Y
F010743Metagenome / Metatranscriptome299Y
F011749Metagenome287Y
F012199Metagenome282Y
F012318Metagenome / Metatranscriptome281Y
F016248Metagenome248Y
F018879Metagenome / Metatranscriptome232N
F020299Metagenome224Y
F021463Metagenome218Y
F021910Metagenome216Y
F022576Metagenome213Y
F023544Metagenome / Metatranscriptome209Y
F025204Metagenome / Metatranscriptome202Y
F025723Metagenome / Metatranscriptome200Y
F031338Metagenome182Y
F031676Metagenome / Metatranscriptome182Y
F032633Metagenome / Metatranscriptome179Y
F033290Metagenome177Y
F034043Metagenome / Metatranscriptome175N
F035159Metagenome172Y
F040411Metagenome161N
F043202Metagenome156Y
F044911Metagenome153Y
F049374Metagenome146N
F056409Metagenome / Metatranscriptome137Y
F057849Metagenome135N
F059611Metagenome133Y
F066475Metagenome126Y
F069617Metagenome / Metatranscriptome123N
F076852Metagenome117N
F079515Metagenome / Metatranscriptome115N
F079605Metagenome / Metatranscriptome115Y
F083594Metagenome112N
F086791Metagenome110N
F087179Metagenome110Y
F088232Metagenome / Metatranscriptome109Y
F089762Metagenome / Metatranscriptome108N
F096526Metagenome104N
F104339Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0007853_1000001All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage46752Open in IMG/M
Ga0007853_1000589Not Available3825Open in IMG/M
Ga0007853_1001709All Organisms → cellular organisms → Bacteria1904Open in IMG/M
Ga0007853_1001936All Organisms → Viruses → Predicted Viral1754Open in IMG/M
Ga0007853_1002128All Organisms → cellular organisms → Bacteria → Proteobacteria1636Open in IMG/M
Ga0007853_1002337All Organisms → cellular organisms → Bacteria1531Open in IMG/M
Ga0007853_1002403All Organisms → Viruses → Predicted Viral1502Open in IMG/M
Ga0007853_1002645All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1403Open in IMG/M
Ga0007853_1003777All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1084Open in IMG/M
Ga0007853_1003907Not Available1062Open in IMG/M
Ga0007853_1003978All Organisms → cellular organisms → Bacteria1049Open in IMG/M
Ga0007853_1004032All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1040Open in IMG/M
Ga0007853_1004034All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1040Open in IMG/M
Ga0007853_1004134Not Available1023Open in IMG/M
Ga0007853_1004218All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1011Open in IMG/M
Ga0007853_1004589All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage959Open in IMG/M
Ga0007853_1004727All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage940Open in IMG/M
Ga0007853_1005072All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage897Open in IMG/M
Ga0007853_1005425All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage862Open in IMG/M
Ga0007853_1005675All Organisms → cellular organisms → Bacteria839Open in IMG/M
Ga0007853_1006427Not Available780Open in IMG/M
Ga0007853_1006646Not Available765Open in IMG/M
Ga0007853_1007305All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes723Open in IMG/M
Ga0007853_1007369All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage719Open in IMG/M
Ga0007853_1007399Not Available717Open in IMG/M
Ga0007853_1007577All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage707Open in IMG/M
Ga0007853_1007689All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage701Open in IMG/M
Ga0007853_1008087Not Available682Open in IMG/M
Ga0007853_1009007All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage642Open in IMG/M
Ga0007853_1009655All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage619Open in IMG/M
Ga0007853_1009769Not Available615Open in IMG/M
Ga0007853_1009931Not Available609Open in IMG/M
Ga0007853_1010397Not Available594Open in IMG/M
Ga0007853_1010448Not Available593Open in IMG/M
Ga0007853_1010735Not Available583Open in IMG/M
Ga0007853_1010858All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage580Open in IMG/M
Ga0007853_1011380All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage565Open in IMG/M
Ga0007853_1011626All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage559Open in IMG/M
Ga0007853_1011846All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage553Open in IMG/M
Ga0007853_1012190All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage545Open in IMG/M
Ga0007853_1012634Not Available534Open in IMG/M
Ga0007853_1013014Not Available525Open in IMG/M
Ga0007853_1013211All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata522Open in IMG/M
Ga0007853_1013800Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0007853_1000001Ga0007853_100000134F025204MSAMDPITTARELATHANDIQHLQGDMDKMVDEMKQIKEAVQAIQKTLAEAHGGWRLLLGVGGAAALIGAIMANLFQGFWSK*
Ga0007853_1000001Ga0007853_10000015F096526VRKIKVHFPWLEVPAQGGFFVPTLKFEEVRVNGLKAALYHRVQAKAEIGRKNGKMGVWFTRVR*
Ga0007853_1000589Ga0007853_10005892F049374LQLTASSATSVTFTSYSVTTGAAANMSAGDVILINALAY*
Ga0007853_1000589Ga0007853_10005894F012318MAYNSAFSPFGPTYLVGSLAAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDATSTPVVTAPALTVPSANTLYIPANGVAVFSGIPPNAWFLSSAASSAEITPGEGIA*
Ga0007853_1001629Ga0007853_10016291F049374MMFKVVVGTGGAASGSITLPTAVNGWLAFAADVTNGSTLFLQLTASSATSVTFTSYSVTTGAAANMSAGDVILINALAY*
Ga0007853_1001709Ga0007853_10017094F020299MYKEGRQFVVDAKKEIDGVVKDVKGIQKDAKGIWGFLTGLFGGVKQENQQKIVEKPAKKAKQKVEFDENQIYAQVADALTKFFHAYNGLKNYAKEQEEL
Ga0007853_1001936Ga0007853_10019363F040411MTEEEILAEMEKIREAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*
Ga0007853_1002128Ga0007853_10021282F001774MALKLKLEQTQFGVPAPKAYARITNFFGTKDNIQVQVAIHYDENARQTNMATVREDAHYIAIESLKGDIIPAIYGVLKTFSQYEGAEDC*
Ga0007853_1002337Ga0007853_10023375F079515NSGNSQTTPSVNTGFAANGFLPADRTTPSATTGDVRGTIDLANASGVNLTPSTGTNKYVFRQIPQAYNVQSATGLFGLTQYYNF*
Ga0007853_1002403Ga0007853_10024033F057849MGKIQEWYDSWLLEQAKQAVANGDFKPRPPKYIFPSDIVMALRMQAEECENNERDPLTGISTWPKETTLEWQAADLIDEQFAEIQHYEKLREDMVELWIQMRESLGGDHDETMA*
Ga0007853_1002645Ga0007853_10026453F021463MNAEALENRVVRLEFKTDNHEDEIKELRKSANDLSKAMASIEKNLAQIKYIAIGALAVVVTQSLGXDRAIKLLFGG*
Ga0007853_1003777Ga0007853_10037772F059611MKDFSLPFLVSKRLLDEYYKAMIAQDRQKAYQIANDLVEMTLKLEDIAHANA*
Ga0007853_1003907Ga0007853_10039072F083594VIWNRSFGDNYGSSSLGTPSFGGHYRPFDYDFGFNSIKRDVRLDNVESHVGESGNSSNICSIQLPYSQCKREETK*
Ga0007853_1003978Ga0007853_10039781F031676MVANMKKQPQQLSREAIEEFKAIYQEEFGEVLSDDEVREIATRLLRFFGVLNKE*
Ga0007853_1004032Ga0007853_10040321F069617CPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI
Ga0007853_1004034Ga0007853_10040342F087179MRYEQSKPLVEDLMDIAVLFHASPSLLRQKIAEAINKHIPDLDPACMERGCLCIDTFSKEEKNT*
Ga0007853_1004134Ga0007853_10041342F089762MVQTYSSLLEYEIGRLIDEAIADELAILANGNVDDIKDYKLRVGMIRGLQKAKELMSEADSNIQSGERG*
Ga0007853_1004218Ga0007853_10042184F069617GRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI*
Ga0007853_1004589Ga0007853_10045891F032633PDDTFSELVVRTAARNGQVICSFTPLKGLTGLVRKFWDQVEGYCHVRVTWDDVPYVNEWDEPFFTKEEREQLSRDFMPWERDCRMKGIPLVGQGVVFPILDWPTYKSTDIDLRDNEKLERLISFDLGIKNDPTVISFFFRDPVEEIIYLQRQIKIPAGETPDEYVHYLLDRESKGVPIALPHDAATAGRYTLTEQSVREVFEDNYGLNCIPGAILNPVNDQGKVTNHKAYGINIMRMGFERKTFMINENCKAFLDECRNYAIDSQGRFSDPDDHIDSARIGILALIQGHGESVVSRANNFEMRRFTPIEGKVQRI*
Ga0007853_1004727Ga0007853_10047272F089762MAQTYSSLLEYEIGRLLDEAIADETSILATGNIEDIKDYKFRVGMIRGFHRAKEFISEADRIIQSGERG*
Ga0007853_1005072Ga0007853_10050721F012199MSEYTRIRTPFLNMSFTPDVPSNALGANEYNSGLNVEADVRGIKKVSGEQAILSAIPGNVFYMDGGFRDQATWVYVAATTQGKWYMITASGITNITPGVGANPNVSLSGYTNDTNVVSDWVGGVVFINDTLRAPMYFRPTDTEIQLYDTAPDNFVWNYESGLSPAVTSVTAGFVRNYCSPNVGNILVAGNLTKTYSTGTTINYPTTIRWSQAFANTGVPATWLPTLNNVANEQEVPVRGPIIDGFFLGANFYVCSYWDTVVLTPIAYQN
Ga0007853_1005425Ga0007853_10054251F021910MGMNRADAYYEPDNYDDRSDEIEERTWQLLKVGGKFDYRTSGAISEALSEMGVDDSKALQDAIDSGDYEQLGRKLISMACEYMEGHAKEVAEFEIND*
Ga0007853_1005675Ga0007853_10056752F010743MENLELELKLTVAHVNTVLKHLSAGVYAEVVDLIGLLHAQAKPQVEAATPPSENTPAEPAPEAPAAQ*
Ga0007853_1006427Ga0007853_10064271F031338VRTLYIIPFLSANGNVPSPFNSPISSAPITCTPCRLKNFNIQIGGQNIFSEPQNYNYQFYNNNALSIMADINGNSLKSKFFSGQITKSMWENGYNVYTINLEKCTDEITDSLMKSFQLIFQIENSAITGISYDFYYMITYQSELSLDRSTGTITNTV*
Ga0007853_1006451Ga0007853_10064513F104339NRKNDTMNDYADTVLRLNRLTKLFLNSILKARKTEAYLIACQITETAQELEDWASKNSVH
Ga0007853_1006646Ga0007853_10066463F086791MAKASNFLMSMYCGDTLLDVYGYVDKDEPSVGHVGGIDIEDVCIADTEISVWEMIHALDFDKFDKQAQESWRG*
Ga0007853_1007305Ga0007853_10073052F007405MVVTISPSHSFTYDGAQLNIYHADKGEGLPKHEHNFCHATMCNSGSCLVSLEGRNYTINKFSQPLNLPANEWHQIEALENNTVFVNVFAEGKY*
Ga0007853_1007369Ga0007853_10073691F035159IVITPTNVKNGGDDAPWTREELKRLKGIQKKLRLAEAKRIAALKADQEARKQTITDLVNPKPVAKTQQSNIQSNQEVSVDIPSNLANIDRYIANLEQQQQDLQNAVLIRSAKLRLEQELAILEAKRQAELDDEEALLAIIL*
Ga0007853_1007399Ga0007853_10073993F022576MTIDLNEHMEQKKQERHAKAYDAIGSAVDGMTIGTILHILSVFTATVLDQMNEPDRSQAAMVFSSVIMESN
Ga0007853_1007577Ga0007853_10075772F044911MTPSEQLHLDAARYATNRKNAYVEAMKKGDVPHMSDEDLNGRWLAHYEGYREGYWVAIGDIKFTTDPLKEKNT*
Ga0007853_1007689Ga0007853_10076892F016248MTKELSPLARSLLGNNGAVKFFTQQEFDDALALAKAEIMTVAIETTKRAIMIEREECAKLADECVNIEELGEVIRNRI
Ga0007853_1008087Ga0007853_10080872F088232MANTQAYFGFTQYQGGAGGAPTFAQSTRRIASGNSTAIYTGDPVNFVSAANGYIQQAAAGTTPLAGIFV
Ga0007853_1009007Ga0007853_10090072F079605TASSRVANTTSQKAGTITLSRERVQAIRDAGAWDDVEKRNKMIRAYAQYDRANKE*
Ga0007853_1009655Ga0007853_10096551F001774MALRLSVATQFGVPAEEAYAKITNFYGTKDQLQVQVAIYFNENARHQNMSTVKENAHYIAMEDLKGDLIPAIYGVLKTFEQ
Ga0007853_1009769Ga0007853_10097691F076852MVDVDRLKKDGKTKYVKLLGKGILTLVDHLFWNLPFCSVKQSQAVRKKAGVTEEERSTKWEEIVAEHDLPGALEQLASGWKEYLGKRAGDAARGAGAVRPACLSTVVLDTP*
Ga0007853_1009931Ga0007853_10099311F056409MKPMTDYEKRLTAKNILAACKDINKLNKRGYAFLNVASGFIAHYDINGFKHYYQREGKLQQDIERNAKANQWTNFRAGDEHADYYHAKRDCYNQILGGLVAREYIDTLF
Ga0007853_1010397Ga0007853_10103971F033290MTKEEIIEMVMQIGGCERPEDDSPALKMFIDFAKLVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRAR
Ga0007853_1010448Ga0007853_10104481F043202MATKKAKPYYVADTGFFGAKVFICFSDASFQQALRDSKITTRHSALDEGIAESHYIQQEGTHYSMLAIVFNFEDMAKEDALERMGTIYHEVSHTVTHIFQHIGEDETKIGDESRSYLGEHLFKQVFSAYATEEDKRERAGERNRKVLDKKNQAVIGALLQMAE
Ga0007853_1010735Ga0007853_10107351F069617MTPEEMSKVICPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDEIDAIYSDDYGYCGLIGI*
Ga0007853_1010858Ga0007853_10108581F018879GDFNYTYQIDDSWVMDQTGSDNTSALFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAAVSSTGAAVTTPRPSAQVQRYLA*
Ga0007853_1010858Ga0007853_10108582F023544MGLNANNEEALVNEDYYTKGILEAGVDAVLRKNNKLFNEVKSGTWSQNFNTGNLKYKVGAIDGERYVQYEQMN
Ga0007853_1011380Ga0007853_10113801F006264MEDFSAKFQQKLSGQAEVCARKTLEWLQKDLQGDRQLTPADVYYLSKAADVLLTIRDDYGKK*
Ga0007853_1011380Ga0007853_10113802F010616VHHFGATNMPHPLDPQSDRKVHITFRKYEDGSLTFEVVGPLEKQAVGSRLNKYGQVQPEKYTWLDPRTGERLMRKADGSFTKEGRGMYAYCVGEKGGGIWPLIDKEAVRISEKNIANPWA
Ga0007853_1011626Ga0007853_10116261F009598MLDKQNVVVQNLASGEGKRSVVEKIAHEVYLKMVDYLRLTQAKNTLNRFNDYHYLTIPVSESTEPIRGIDYIHPVVAPGIDYATAIITKCLMPDGKVNFEFQKTHDNDEGAQQSTEMVMRMINNKNDSYALIRDWAQDGLLHKNGIVMVMPI
Ga0007853_1011846Ga0007853_10118462F025723FIAVCRDDPIVIPQYDMNQQVVGSYTERPLLGFCWFDRGGYTTYSNEEISNAKFHHIDLSLSPRTRVRLVNEMIDQHILWAHTYGIPIICSTSIRAEHNGFMKIHQKRGFTVNGSYAWIRTEEAMKCLINQ*
Ga0007853_1012190Ga0007853_10121902F012318AAVQVKSSNNVYPSGYRIVNITSSAIRVSWQPQEPNDGTSTPVVTAPALTVPSYNTFYIPANGVQVFSGIPPNAWFLSSAASSAEITPGEGIA*
Ga0007853_1012634Ga0007853_10126341F066475MTTPRDSGTRDRYMEASSDLAEHIGDKVLVLLRSPENQARIQSILDPIISHIINRIFPYILLSAILFLILFILTIGTFYMVMRTSGGAVGVTTVKLSD*
Ga0007853_1013014Ga0007853_10130141F034043YGDLATSNDWTVFFELPDFKAFSIKHFPQDICQTTKQVDAFVISRSRKICFVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQLFGFTSKELKALVDECSLVSRRSSYYIWLNRFHQTFIPFQMVQVDIESYQSIAVV*
Ga0007853_1013211Ga0007853_10132111F011749HINYVNLLPRRSTPPWWREAGESGTKQLYQPEPHQVTYMVPITRILGRLPLVPVGDHGTIPASMSNRKHQLFKHGRCDEAGRPGTGSKLYYINSWAMCWPTDHPKKPLTG*
Ga0007853_1013800Ga0007853_10138001F040411MTEQEILAEMEKIKEAQAHWQSAQDGSYEMALHYAGYTRLRNELKALREAKHD*

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