Sample 3300005643

Overview

Basic Information
IMG/M Taxon OID	3300005643 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118793 \| Gp0095085 \| Ga0079369
Sample Name	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_biof (version 3)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	524145400
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
Type	Engineered
Taxonomy	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	South Africa: Cape Town
Coordinates	Lat. (^o)	-33.927	Long. (^o)	18.452665	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F025775	Metagenome	200	Y

Family

Category

Number of Sequences

3D Structure?

F025775

Metagenome

200

Scaffold	Taxonomy	Length	IMG/M Link
Ga0079369_1014793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	4235	Open in IMG/M
Ga0079369_1015908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	4128	Open in IMG/M
Ga0079369_1027440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	3344	Open in IMG/M
Ga0079369_1035643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	2984	Open in IMG/M
Ga0079369_1063271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	2258	Open in IMG/M
Ga0079369_1112496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1608	Open in IMG/M
Ga0079369_1267366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	631	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0079369_1014793

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans

4235

Open in IMG/M

Ga0079369_1015908

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus

4128

Open in IMG/M

Ga0079369_1027440

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus

3344

Open in IMG/M

Ga0079369_1035643

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans

2984

Open in IMG/M

Ga0079369_1063271

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus

2258

Open in IMG/M

Ga0079369_1112496

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans

1608

Open in IMG/M

Ga0079369_1267366

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans

631

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0079369_1014793	Ga0079369_10147935	F025775	MKQFLTFQRFPMVVVVALIVWSWISILSVVIGSLF*
Ga0079369_1015908	Ga0079369_10159085	F025775	MKQLLTFQSFPMVVVTGLIIWAWISILSVLIASFF*
Ga0079369_1027440	Ga0079369_10274403	F025775	MKQLLTFQGFPMVVVTALIVWAWISIFSVLIASFF*
Ga0079369_1035643	Ga0079369_10356434	F025775	MKQFLPFQGFPMVVVVALIVWSWISILSVVIGSLF*
Ga0079369_1063271	Ga0079369_10632713	F025775	MKQLLTFQGFPMVVVTGLIVWAWISIFSVLIGSFF*
Ga0079369_1112496	Ga0079369_11124964	F025775	MKQFLTFQGFPMVVVVALIVWSWISILSVVIGSLF*
Ga0079369_1267366	Ga0079369_12673662	F025775	MKQFLTFQGFPMVVVVALIVWSWISILSMVIGSLF*

Scaffold ID

Protein ID

Family

Sequence

Ga0079369_1014793

Ga0079369_10147935

F025775