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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005794 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0112339 | Gp0119883 | Ga0079490 |
| Sample Name | Subglacial sediment microbial community from Lake Whillans, Antarctica - at 0-2 cm depth |
| Sequencing Status | Permanent Draft |
| Sequencing Center | The Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 12994523 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → subglacial lake → lake sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | West Antarctica | |||||||
| Coordinates | Lat. (o) | -84.24 | Long. (o) | -153.694 | Alt. (m) | N/A | Depth (m) | 0 to .02 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025775 | Metagenome | 200 | Y |
| F063102 | Metagenome | 130 | Y |
| F090572 | Metagenome / Metatranscriptome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0079490_100087 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus | 4282 | Open in IMG/M |
| Ga0079490_100865 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1895 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0079490_100087 | Ga0079490_1000873 | F025775 | MKQFMSFQNFPMVVVTLMIIWAWISILSVLIASFF* |
| Ga0079490_100865 | Ga0079490_1008653 | F090572 | MKRQTVILPFNLPRLTDKAAAQLLDLLHELIEGIEHHYAAQIHRYRKRQREMHQHRQSPPSTLTDSPF* |
| Ga0079490_111938 | Ga0079490_1119381 | F063102 | VAEQIEFGFAGDVGVLPPMDHRLQGGGISVPKCFNESREGENC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |