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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006234 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116840 | Gp0121739 | Ga0082394 |
| Sample Name | Marine sediment microbial communities, 1.1 km from oil contamination, elevated hydrocarbon, Gulf of Mexico ? BC366 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Yale Center for Genome Analysis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 47250031 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Sediment Microbial Communities From Different Distances From Oil Contamination, Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.3 | Long. (o) | -88.2 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000237 | Metagenome / Metatranscriptome | 1498 | Y |
| F004498 | Metagenome / Metatranscriptome | 435 | Y |
| F021791 | Metagenome / Metatranscriptome | 217 | Y |
| F030135 | Metagenome / Metatranscriptome | 186 | Y |
| F047147 | Metagenome / Metatranscriptome | 150 | Y |
| F082867 | Metagenome / Metatranscriptome | 113 | Y |
| F099485 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0082394_103999 | Not Available | 592 | Open in IMG/M |
| Ga0082394_129284 | Not Available | 627 | Open in IMG/M |
| Ga0082394_132460 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus | 561 | Open in IMG/M |
| Ga0082394_135782 | Not Available | 933 | Open in IMG/M |
| Ga0082394_145112 | Not Available | 752 | Open in IMG/M |
| Ga0082394_151328 | All Organisms → cellular organisms → Archaea | 869 | Open in IMG/M |
| Ga0082394_178741 | Not Available | 933 | Open in IMG/M |
| Ga0082394_178745 | Not Available | 933 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0082394_103999 | Ga0082394_1039991 | F047147 | AVTEGPVREEQLLHDMCLLGAMTVEITQILTRAR* |
| Ga0082394_123267 | Ga0082394_1232671 | F000237 | SNIYKTYYVIFTNKHLNTDQMTRIMIFHYFTP*YYLYLIQLHVLFCHES*DSDSGETTFEDKSGSYIS*FYDAFLKEIQDA*Y*TLLVFIYF*SHHASAHTVNFFFFERWNIAELDEIRFYGVAPHWYFRPLMGILVISPTHYEGLM*LALFFLLLTFLPMIYNLYNNSNKHIPTIPMQNSLIQTFAFILFVLSLFCTASILPCGRYYYEPEGGYVGNP*IKFSLQYVYLYMAWFLHHLDLIDHYIFLFFQTFLKKINKFVMRNNKDYS*KRENFVFFFNRNYVF* |
| Ga0082394_129284 | Ga0082394_1292841 | F030135 | RGPKNREELATLSSFTDIWHSTVVGCQFPDAILPGWEAFDLVAGPLS* |
| Ga0082394_132460 | Ga0082394_1324601 | F004498 | MCAPAGCGFVPGLPECFDKKETVVQEVPEETCQLHPQKTCKYVTKLVPSLRPQEECVDVPKEVCQRSRINPRKVQKPVVKKWCYTPSPGSGLL* |
| Ga0082394_135782 | Ga0082394_1357821 | F021791 | MLVRFVADYRIKPHVPPFIQIPANFVKFKSCEFTTQAEYLYVNY* |
| Ga0082394_145112 | Ga0082394_1451121 | F030135 | DFSEGLKDREELATLSSITDIGHSAYAGRQFPDAILPGREAVDLVAGPLN* |
| Ga0082394_151328 | Ga0082394_1513283 | F099485 | NWQHSPSKTQVARTPVKAVSKYLQQSQTLTHEDLMGLSWMLSEEGD* |
| Ga0082394_178741 | Ga0082394_1787411 | F082867 | FVSSLSIPKERKMPKKKKNSRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLVLSVNPALTDLPNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPGDVKGATWDENARGSIRGQSLGINHFSSVTQP* |
| Ga0082394_178745 | Ga0082394_1787451 | F082867 | MPKKKKNSRSRRVHHINDINHNDTNITVQYRVVKPLTFTSNTLVLSVNPALTDLPNTLATIYRQYRVTELSFTFQASSDAGAYALAMQYVPQIGGTPSTLPTLLSEFEGPAVGYYETGRGREYTFRVPSDVLNAMGLNYYSTRTAVTPIQDPDILTQGLMVFLTSSPNIPVVAYMHVKYEFQTLEDPSFLASLFDDKKQDNDMLVVPRPGDVKGATWDENARGSIRGQSLGINHFSSVTQP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |