Sample 3300006261

3300006261: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764588959

Overview

Basic Information
IMG/M Taxon OID	3300006261 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052824 \| Ga0099521
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764588959
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	62140761
Sequencing Scaffolds	21
Novel Protein Genes	26
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus infantis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F047127	Metagenome	150	N
F051214	Metagenome	144	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F097525	Metagenome	104	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0099521_100001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	564764	Open in IMG/M
Ga0099521_100144	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42447	Open in IMG/M
Ga0099521_100718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11806	Open in IMG/M
Ga0099521_100845	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	10344	Open in IMG/M
Ga0099521_101396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	6922	Open in IMG/M
Ga0099521_102056	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4865	Open in IMG/M
Ga0099521_102321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4379	Open in IMG/M
Ga0099521_102563	All Organisms → Viruses → Predicted Viral	3992	Open in IMG/M
Ga0099521_103346	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3050	Open in IMG/M
Ga0099521_103629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2832	Open in IMG/M
Ga0099521_103924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2597	Open in IMG/M
Ga0099521_104123	All Organisms → Viruses → Predicted Viral	2466	Open in IMG/M
Ga0099521_104720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2134	Open in IMG/M
Ga0099521_104988	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2011	Open in IMG/M
Ga0099521_105038	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1989	Open in IMG/M
Ga0099521_105278	All Organisms → Viruses → Predicted Viral	1892	Open in IMG/M
Ga0099521_105289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1889	Open in IMG/M
Ga0099521_105572	All Organisms → Viruses → Predicted Viral	1778	Open in IMG/M
Ga0099521_110371	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	923	Open in IMG/M
Ga0099521_111830	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	809	Open in IMG/M
Ga0099521_115804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus infantis	604	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099521_100001	Ga0099521_100001149	F073671	MESLLRLRVVNNKQTEHELSELYEKERSLEKALELVREKIRELINYTNKNKAAR*
Ga0099521_100144	Ga0099521_10014416	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESK*
Ga0099521_100144	Ga0099521_10014446	F101360	MSKENALRKAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTSQEEAIRELISTGDISILEIESGDA*
Ga0099521_100718	Ga0099521_10071813	F074985	MELTDGGWYKTPRIVKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRGSDFMTRLNFNRDQKFLYNLISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0099521_100718	Ga0099521_10071814	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCNDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKAYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0099521_100718	Ga0099521_10071815	F027205	VASRLIVSADDILKAVKESEEFERQALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRGAK*
Ga0099521_100845	Ga0099521_1008453	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILTCAGMITYVYTYLKKHQKLNLKIVIIALAAALLFEYAYPWRLIFG*
Ga0099521_101396	Ga0099521_1013964	F042387	MAGLFFVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVSVNENIKYHSESYAYNLRDEYFTHTYVLNGENITKIHHEISKNVSGGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVITMVYEYNK*
Ga0099521_102056	Ga0099521_1020564	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0099521_102321	Ga0099521_1023214	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0099521_102563	Ga0099521_1025634	F051214	MPGKIVAHDAHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0099521_103346	Ga0099521_1033462	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYNKNISSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0099521_103629	Ga0099521_1036291	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLVITAIGFLFAAFTVILYTISAE*
Ga0099521_103924	Ga0099521_1039242	F047127	MKKTFAFILLSIISLTKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDTNYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0099521_104123	Ga0099521_1041231	F071329	ISGLSSIGAGMIASKLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVELQFDATIKAVEEARDHIEIED*
Ga0099521_104123	Ga0099521_1041236	F027205	VASRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYILDEYDIPRRIKRSAK*
Ga0099521_104720	Ga0099521_1047202	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFNTKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE*
Ga0099521_104988	Ga0099521_1049884	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVLTNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLETGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0099521_105038	Ga0099521_1050382	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0099521_105278	Ga0099521_1052782	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINIFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYARRTTKLRVVTDSETGEKKYLLDHIKAMHID*
Ga0099521_105289	Ga0099521_1052892	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0099521_105572	Ga0099521_1055722	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFRLSDDLKSKFTRHTITNAKGHQSYDWVLKNVEWAADTIRYF*
Ga0099521_105572	Ga0099521_1055723	F027205	SRLIVSADDILKAVKESEEFEKKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0099521_110371	Ga0099521_1103712	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVNECMLFSEVLGLLEWFEQISVDKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*
Ga0099521_111830	Ga0099521_1118302	F018385	MAEYENQWGPYKENSIEKDRDPVLDDPIIYGVNVKHFTVTVYSPEGRVSKYWNARILKDQVGNCRVACPREGKILCFNWLRWNAYMFSHDGMNELVFMPDSRRRIVSQLSLDNSGKKEVN
Ga0099521_115804	Ga0099521_1158041	F064818	KLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006261: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764588959

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences