NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006301

3300006301: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817



Overview

Basic Information
IMG/M Taxon OID3300006301 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052468 | Ga0099617
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size79615556
Sequencing Scaffolds16
Novel Protein Genes19
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F040685Metagenome161N
F043991Metagenome155N
F051211Metagenome144N
F051214Metagenome144N
F054111Metagenome140N
F057446Metagenome136N
F063778Metagenome129Y
F067847Metagenome125N
F071328Metagenome122N
F071329Metagenome122N
F077405Metagenome117N
F081456Metagenome114N
F090517Metagenome108N
F103436Metagenome101Y
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0099617_100284All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes11592Open in IMG/M
Ga0099617_100378All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes10359Open in IMG/M
Ga0099617_100485All Organisms → Viruses9253Open in IMG/M
Ga0099617_101825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus4509Open in IMG/M
Ga0099617_103653All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2976Open in IMG/M
Ga0099617_105495All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus2282Open in IMG/M
Ga0099617_106255All Organisms → Viruses → Predicted Viral2091Open in IMG/M
Ga0099617_106269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales2088Open in IMG/M
Ga0099617_107744All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1802Open in IMG/M
Ga0099617_108734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1656Open in IMG/M
Ga0099617_112159All Organisms → cellular organisms → Bacteria1301Open in IMG/M
Ga0099617_113269All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1221Open in IMG/M
Ga0099617_124687All Organisms → cellular organisms → Bacteria757Open in IMG/M
Ga0099617_131697All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae619Open in IMG/M
Ga0099617_135511All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii563Open in IMG/M
Ga0099617_135773All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales559Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0099617_100284Ga0099617_10028413F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0099617_100284Ga0099617_10028420F018385MAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVNKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0099617_100284Ga0099617_1002849F081456MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAMTVILYTISAE*
Ga0099617_100378Ga0099617_1003782F051214MPGKIIAHHTHLRIDTEFIELRDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLV*
Ga0099617_100485Ga0099617_1004852F105377VRDFDSLPLLTPEEAFERAREMGWNRPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDACAMLHERSWRLWQTTAKVYVGGELRTVQAIRARYRDV*
Ga0099617_101825Ga0099617_1018254F103436MITTSKGGWRYKSDDEIFDSLRDWVMKCDLKYSKDDALGKIARASALWGGADYVTAVHLLDENKPYFKKSDWPYYALGIEILRARKHEFFNE*
Ga0099617_103653Ga0099617_1036536F027205VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKDPRETLHPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRK*
Ga0099617_105495Ga0099617_1054955F077405AGTDRGARPWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0099617_106255Ga0099617_1062556F071329MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED*
Ga0099617_106269Ga0099617_1062691F105377VRDFDNLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLIRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRARYRGI*
Ga0099617_107744Ga0099617_1077443F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0099617_107744Ga0099617_1077444F051214MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPLYVYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0099617_108734Ga0099617_1087342F063778MPETISEGAKQQLLQQLQDALGLVADADTSANDVAAITHSAADGHQLTEVMLQEMTAARGCLKLCADQIEYAISNIEAIPLDPPPED*
Ga0099617_112159Ga0099617_1121592F071328MSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIAPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0099617_113269Ga0099617_1132692F040685MKKLLFKLFFALAFASISLHGQEKIQQVEFSSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELLKEVSLPNTPKNWEAFTKKINLDKFKELKDGPSEQAVDGRGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0099617_124687Ga0099617_1246872F051211MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKICRQQYERHVILRVFIDEFAYDVDPSIDIGLTPTLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0099617_131697Ga0099617_1316971F054111DNITHETFLKLIEHLKNLQEFTFLEYIIAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0099617_135511Ga0099617_1355111F090517MNRRIFSFCGLLLGLLFLSSSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL*
Ga0099617_135773Ga0099617_1357732F057446MNSISFGKTTITSYPEYFEIADNKKTNKLLCLSVSLVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYG
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Biomedical Sciences Research Center "Alexander Fleming"
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