Sample 3300006498

Basic Information
IMG/M Taxon OID	3300006498 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052511 \| Ga0100374
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300006498 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052511 | Ga0100374

Sample Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	151863366
Sequencing Scaffolds	16
Novel Protein Genes	27
Associated Families	27

Dataset Contents

Total Genome Size

151863366

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter	1
All Organisms → cellular organisms → Bacteria	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F071327	Metagenome	122	N
F074985	Metagenome	119	N
F078842	Metagenome	116	N
F081454	Metagenome	114	N
F081456	Metagenome	114	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F103430	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0100374_100013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	223347	Open in IMG/M
Ga0100374_100019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter	208104	Open in IMG/M
Ga0100374_100399	All Organisms → cellular organisms → Bacteria	43772	Open in IMG/M
Ga0100374_100408	All Organisms → cellular organisms → Bacteria	42730	Open in IMG/M
Ga0100374_100443	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	40315	Open in IMG/M
Ga0100374_100623	Not Available	31051	Open in IMG/M
Ga0100374_101183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	17801	Open in IMG/M
Ga0100374_102127	All Organisms → cellular organisms → Bacteria	10682	Open in IMG/M
Ga0100374_102419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	9479	Open in IMG/M
Ga0100374_103258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	7183	Open in IMG/M
Ga0100374_103573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6590	Open in IMG/M
Ga0100374_103866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	6131	Open in IMG/M
Ga0100374_105412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → Candidatus Nanosynbacter lyticus	4457	Open in IMG/M
Ga0100374_106444	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3754	Open in IMG/M
Ga0100374_111251	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2120	Open in IMG/M
Ga0100374_122400	Not Available	998	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100374_100013	Ga0100374_100013202	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRVVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQGEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFAAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0100374_100019	Ga0100374_10001971	F085821	MNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTRRQILEQDNGKHDEAYIDEWVKANVNKTLSTIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKIK*
Ga0100374_100399	Ga0100374_10039914	F074985	MTRSVISEEDIVELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0100374_100399	Ga0100374_10039915	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRNTMTNEKGHQTYDWVLENVEWADDTIRYF*
Ga0100374_100399	Ga0100374_10039916	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRDEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*
Ga0100374_100399	Ga0100374_10039919	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEEVKLEDYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0100374_100399	Ga0100374_10039920	F051214	MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYRDKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0100374_100399	Ga0100374_10039922	F018385	MAEYENQWGPYKEHSIEKDRDPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGCCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEMK*
Ga0100374_100399	Ga0100374_10039933	F081456	MFEEPPIYYILISLIFLIVFGAIAFATWLVWLTPIAFMAKLVMTAIGFLLCAITVILYTISAD*
Ga0100374_100408	Ga0100374_10040825	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN*
Ga0100374_100408	Ga0100374_10040844	F049707	VSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0100374_100443	Ga0100374_1004434	F051211	MKAKKAIRIFKKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRIFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKLFRGNPKEFYIAIDKWLADTRAHHSS*
Ga0100374_100623	Ga0100374_10062344	F084362	MSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0100374_100623	Ga0100374_1006236	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDDRQRVMNTLSELKEVLDQEAIAYQIENDLQLI*
Ga0100374_101183	Ga0100374_10118317	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDIVVPYKQSTQMGDIEMIMNIKYKFLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0100374_102127	Ga0100374_1021277	F030786	MKRTRIHKVVFQMLVVMVVTGSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0100374_102419	Ga0100374_1024193	F097526	MTENSTMATTIYTQDDYCRLCERLNDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAAEFEQAGRNGHPDPAELERRERWDSHCKRLQQHARMAGDQITNADNAAVSRLTKQCEKNGSRDTAIPSPHDDGYGFTAGLRDFPLNASQTALLWRMAVLTIAEMTDTTPELTAHYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLLSAAKAYENRNTDNRLEDAMTKP*
Ga0100374_102795	Ga0100374_1027951	F061927	MKNPIFILSAMLILGACSSDSTQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSN
Ga0100374_103258	Ga0100374_1032584	F101358	LTQPITTDGMPQERATHPDTYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIINKDDVTLVRMTKLVNRSNIYQLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYDHLGGDSARQLVGSVAAKASGEVDNSPLVQRALECIR*
Ga0100374_103573	Ga0100374_1035733	F040685	MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0100374_103573	Ga0100374_1035734	F051212	MKKFFFIFVLCWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSKLYNHLNLKK*
Ga0100374_103573	Ga0100374_1035736	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNRK*
Ga0100374_103866	Ga0100374_1038666	F063778	MPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIDAYLKNCQTSINDAIGNIEAIPLDPPPED*
Ga0100374_105412	Ga0100374_1054125	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAESYSPEAKKTYDEAVREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGCDFLEYIKNLSSSVFCDNLQKALVRCSDSHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVDS*
Ga0100374_106444	Ga0100374_1064443	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASEFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQTLTLKIVVIALATALLFEYAYPWRLIFG*
Ga0100374_111251	Ga0100374_1112513	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQEIHQKTEKIAECSDKVCYHKVHLQTKSDCDCGFLCTLNYFYILPEKPQTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0100374_122400	Ga0100374_1224001	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006498: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences