Sample 3300006645

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300006645

3300006645: Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_3 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300006645 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0103597 \| Gp0123888 \| Ga0099769
Sample Name	Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	97825649
Sequencing Scaffolds	18
Novel Protein Genes	19
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. EsD8	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae → Helacdivirus → Helacdivirus borborovicinum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria
Type	Engineered
Taxonomy	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Austria: Klosterneuburg
Coordinates	Lat. (^o)	48.3	Long. (^o)	16.2	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001758	Metagenome / Metatranscriptome	640	Y
F002779	Metagenome / Metatranscriptome	530	Y
F014988	Metagenome / Metatranscriptome	258	Y
F017318	Metagenome / Metatranscriptome	241	Y
F020196	Metagenome / Metatranscriptome	225	Y
F020197	Metagenome / Metatranscriptome	225	Y
F022892	Metagenome / Metatranscriptome	212	Y
F025291	Metagenome / Metatranscriptome	202	N
F037756	Metagenome / Metatranscriptome	167	Y
F049632	Metagenome / Metatranscriptome	146	Y
F051952	Metatranscriptome	143	N
F052619	Metagenome / Metatranscriptome	142	Y
F059886	Metagenome / Metatranscriptome	133	Y
F070166	Metatranscriptome	123	N
F081239	Metagenome / Metatranscriptome	114	Y
F082866	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0099769_1000594	Not Available	662	Open in IMG/M
Ga0099769_1002299	Not Available	583	Open in IMG/M
Ga0099769_1006846	Not Available	979	Open in IMG/M
Ga0099769_1009133	Not Available	1112	Open in IMG/M
Ga0099769_1010596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	514	Open in IMG/M
Ga0099769_1015452	All Organisms → cellular organisms → Eukaryota	1115	Open in IMG/M
Ga0099769_1018311	Not Available	813	Open in IMG/M
Ga0099769_1047531	Not Available	750	Open in IMG/M
Ga0099769_1051603	Not Available	546	Open in IMG/M
Ga0099769_1081488	Not Available	1029	Open in IMG/M
Ga0099769_1086001	Not Available	804	Open in IMG/M
Ga0099769_1230298	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	815	Open in IMG/M
Ga0099769_1262264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	519	Open in IMG/M
Ga0099769_1265481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. EsD8	731	Open in IMG/M
Ga0099769_1279736	Not Available	1114	Open in IMG/M
Ga0099769_1289742	Not Available	845	Open in IMG/M
Ga0099769_1290029	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1370	Open in IMG/M
Ga0099769_1300018	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae → Helacdivirus → Helacdivirus borborovicinum	1772	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0099769_1000594	Ga0099769_10005943	F081239	VIPGAEAGFTGSKGTFARAGYAKQDTGDQERLETVPSRIK*
Ga0099769_1002299	Ga0099769_10022991	F081239	AEAGFTGSNGTFARASYAKQDTGDQERLETVPNRIK*
Ga0099769_1006846	Ga0099769_10068462	F070166	ALFHNQLWLQTKCQVDPHFKVKFGMTLEVIASFLKECNFSRGLQPATISRMKAKALTLEGDFLIPKRNMPNLEAQLRNSISTKWRKPEGVEVSRLPPKQHIGKGYRDHGTAQKPEIDGSPSWQEVGSEFGNLEREEFELYLKVLKIAKGESNDSRNEQIKQIQRLIAVNEAIKRIHPNWRNTEIAEASKGKNWHEV*
Ga0099769_1009133	Ga0099769_10091331	F070166	LVSKIAYGKDFSLIELAALFHNQLWLQVKCETDVHFKEKFGVSLEEIAKILKECNFSRGLQPGTISRMKAKVLALEGDFLIPQRNLPNLEAQLRNSITTRWRKQEGVEINKLPPKSFIGKGYRDHGTAPSPEKDGSPSWQEVGSEFSNLEREHTENLLFLLKVIDNEPNISIQEKLQGIRRALEIVTAIKRINPNWRNSQIAEASKGRIC*
Ga0099769_1010596	Ga0099769_10105962	F059886	VIYASRAAFAVLRGGRHQLSPTFPRSPGIIPAVLSVAPFRPLRFDC
Ga0099769_1015452	Ga0099769_10154522	F082866	MHHQLPNRKRTLNLLLRKASGSGKICVLGQIEPQTPRLVVSFRQYLQVSVLQPYSPQNPKPSGFPGDANCSASEMVSFKA*
Ga0099769_1018311	Ga0099769_10183111	F025291	MVNLQREINIFRESAWRVITYNYHLGDHSSTGLYTLNVGADQRYMSFQTLLSTDEFQNMSVVYNEYKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALTAQSCEWNLKGLGPNFGIWLDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVVEFTNPK
Ga0099769_1037056	Ga0099769_10370561	F001758	EKSGQAGWRDSSQAGAQVPGAEAEFTSSSGEVRASSVHAKKELGDEER*
Ga0099769_1047531	Ga0099769_10475312	F037756	LFPVPTLGAHLAVAAGFPTPFSAANGVSGLVAGPSNLSRG*
Ga0099769_1051603	Ga0099769_10516031	F051952	PDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEIVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRSIFTSLEDVVSANPQDRLIRMREVFGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFPPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTS
Ga0099769_1081488	Ga0099769_10814881	F022892	ANNIGVLYRILPPYIVANQLNIFIPVGTAIIIVAAVK*
Ga0099769_1086001	Ga0099769_10860012	F017318	KRAAKRRVSRNKSPHQTTMGIPLLAAPLKFERTVEGLFDITCDGINPSVGLFNFSLSDLPSNSDFTNLFDMFRIDKIECTWYPEYTVLSDSGLVSNAVDVQVNTAIAQISNTPTVVSDVLQYKTCVGTGITQIHKRSFQPSYLMDGICPCSCFLSCNNATANWYGVAYGVAPTGTAMLFKSRAKFFMSFVQSR*
Ga0099769_1230298	Ga0099769_12302982	F049632	MSSYNPTNSQENYQFMNSAVENKGLFSRILRNLSSWGMNYDDMILRNQIGVGVNEDPYSQQGNSMYDFFSRRAVASVLNKKSIPYLDRSYPD
Ga0099769_1262264	Ga0099769_12622642	F020197	MANTESKPFSQGYVLRTTAKHMRKSIDISIRKTFERIAEFDGNLEKSQEVFKTLGMLHAMRKQIDDFQLDNKEEFKGV*
Ga0099769_1265481	Ga0099769_12654811	F020196	MYSCGQRISSGNRAESRRDPVSGRQQSCPRQGERAGHHRGLRAGHAFRGLIRELGRASRLLGREHRRWGDRCEQHPGDHGTTQAVGEPTLAQVRGDTNHGASTQGTGREPEANQPGRTKAVVAMRSSASSGTARELNWRRGELRPKGPTIKAGRRREGKAGHDLWARERQVRLRAHRPVSTRLAWIAVES
Ga0099769_1279736	Ga0099769_12797361	F052619	MNTPVYRPVHKFSRTVEGAYDIICDGITPSLSGLIFQLSSLPSFTDFTNLFDMYRITKIEIDWVPEYTELTDAALVSNAVNVRFNSVVDISDAAAPLAVNDLLQYETVKSTSITKGHSRSWKPCFLMNALVPCSCWLPTSAPNERHYAIKVAVPPTGVAMTFRSRVKFFVECANVN*
Ga0099769_1289742	Ga0099769_12897421	F025291	KQPNQRKTGKKSNNNNKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMSVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSSRIFAPKALNAQSCEWNLQGVGPNFNVWLDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVVEFTNPK*
Ga0099769_1290029	Ga0099769_12900291	F002779	MKNLKLELFNFKQSLDFDRSDIAYIVEGHMNACNDLSEKTIIFSLNEKLKSFTYDDDVNTLLEGLNDDMSKYQLLYELKNLYSVLNSKNQGELYRQPINVLLQTINLDTDEDRMSKVLNELAIYDWVPEIKLFVYNLTKSPEQRSNLLSGGKSEVVYTIVEQVEDGHLAYIKDSWFLLTDDSIEKTLLENHVKDDNRMKTLRSLQTAMQFATINESRIDFRISEYLTIGLSVNDSTIFINEDELSEDTSLENLFSSPIVPIVNRNFYPLLVEVSNNIDSFVELDVVKRVSNLISPTLEVFAFNYKKNTFIYRCDERYGNSFFKYESALELVNEVRNELNYDLTFFYDNKLSKEIVAKKQLEDKERQITLKLEDVNFNISKLNGSVKVLGSTDVLTEALSNLEKRRDLLVDDLRAVKEVQDKERVRL*
Ga0099769_1300018	Ga0099769_13000182	F014988	MSFNPASPITGAAVPGFTNPTYTIVVDTAPNINGKQYAVTVMGGTQVGVDANSVSKPFTLTFFRPAVLRVLPAVNPVTGVVKNIPVNSYKLITRKGAVPAVNQSIQVARITTVIEVPAGTDTYEPEDIKAMISAHFGAGYANASGIADTVITGVL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.