Sample 3300006742

Overview

Basic Information
IMG/M Taxon OID	3300006742 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052566 \| Ga0101805
Sample Name	Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	58300398
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F061925	Metagenome	131	N
F067847	Metagenome	125	N
F077405	Metagenome	117	N
F081456	Metagenome	114	N
F090517	Metagenome	108	N
F097527	Metagenome	104	N
F103431	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F040685

Metagenome

161

F047127

Metagenome

150

F051212

Metagenome

144

F061925

Metagenome

131

F067847

Metagenome

125

F077405

Metagenome

117

F081456

Metagenome

114

F090517

Metagenome

108

F097527

Metagenome

104

F103431

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0101805_100743	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10788	Open in IMG/M
Ga0101805_103294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava	3100	Open in IMG/M
Ga0101805_103384	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3029	Open in IMG/M
Ga0101805_107916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1405	Open in IMG/M
Ga0101805_111803	All Organisms → cellular organisms → Bacteria → Proteobacteria	956	Open in IMG/M
Ga0101805_113232	Not Available	861	Open in IMG/M
Ga0101805_114740	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
Ga0101805_117675	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
Ga0101805_119620	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	584	Open in IMG/M
Ga0101805_119865	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	575	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0101805_100743

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279

10788

Open in IMG/M

Ga0101805_103294

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava

3100

Open in IMG/M

Ga0101805_103384

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

3029

Open in IMG/M

Ga0101805_107916

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus

1405

Open in IMG/M

Ga0101805_111803

All Organisms → cellular organisms → Bacteria → Proteobacteria

956

Open in IMG/M

Ga0101805_113232

Not Available

861

Open in IMG/M

Ga0101805_114740

All Organisms → cellular organisms → Bacteria

775

Open in IMG/M

Ga0101805_117675

All Organisms → cellular organisms → Bacteria

651

Open in IMG/M

Ga0101805_119620

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

584

Open in IMG/M

Ga0101805_119865

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

575

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0101805_100743	Ga0101805_1007434	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0101805_103294	Ga0101805_1032946	F103431	MIDLDALVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKKGFHVCIPED*
Ga0101805_103384	Ga0101805_1033845	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMFWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE*
Ga0101805_107916	Ga0101805_1079161	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPC
Ga0101805_111803	Ga0101805_1118032	F061925	SEEAVSSVVTDLKNCELFSSSTMDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAVNSFSKNIFSALKSILTKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0101805_113232	Ga0101805_1132322	F077405	GRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKIFFDWLKIIQK*
Ga0101805_114740	Ga0101805_1147401	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYIENLVIKKNLLQSSVEAYKLD
Ga0101805_117675	Ga0101805_1176752	F051212	MTTSPDTQKTSISEKQNAEKIEKITYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTDIQNNKTWDYITKQIIDIKYSQLNNH*
Ga0101805_119620	Ga0101805_1196201	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKY
Ga0101805_119865	Ga0101805_1198651	F040685	PHRQEKKQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAKEFGKKSIYE*

Scaffold ID

Protein ID

Family

Sequence

Ga0101805_100743

Ga0101805_1007434

F090517

MNRRILSFCGLLLGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*

Ga0101805_103294

Ga0101805_1032946

F103431

MIDLDALVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKKGFHVCIPED*

Ga0101805_103384

Ga0101805_1033845

F081456

MFEEPPIYYILISLIFLIVFGAISFATWMFWLTAISFFAKLVVTAIGFLLAAMTVILYTISAE*

Ga0101805_107916

Ga0101805_1079161

F097527

MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPC

Ga0101805_111803

Ga0101805_1118032

F061925

SEEAVSSVVTDLKNCELFSSSTMDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAVNSFSKNIFSALKSILTKQNYHLTDCDTDEEVTLEHIFRSVI*

Ga0101805_113232

Ga0101805_1132322

F077405

GRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKIFFDWLKIIQK*

Ga0101805_114740

Ga0101805_1147401

F047127

MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYIENLVIKKNLLQSSVEAYKLD

Ga0101805_117675

Ga0101805_1176752

F051212

MTTSPDTQKTSISEKQNAEKIEKITYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTDIQNNKTWDYITKQIIDIKYSQLNNH*

Ga0101805_119620

Ga0101805_1196201

F067847

MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKY

Ga0101805_119865

Ga0101805_1198651

F040685

PHRQEKKQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAKEFGKKSIYE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006742: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences