NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007287

3300007287: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007287 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052717 | Ga0104873
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size70904893
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2797
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F040685Metagenome161N
F043235Metagenome156N
F045567Metagenome152N
F046433Metagenome151N
F047508Metagenome149N
F053092Metagenome141N
F054109Metagenome140N
F057446Metagenome136N
F077405Metagenome117N
F090517Metagenome108N
F094006Metagenome106Y
F103431Metagenome101N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104873_100016All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27958050Open in IMG/M
Ga0104873_100102All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27923001Open in IMG/M
Ga0104873_100334All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27913720Open in IMG/M
Ga0104873_100341All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27913635Open in IMG/M
Ga0104873_100611All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2799898Open in IMG/M
Ga0104873_100683All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2799289Open in IMG/M
Ga0104873_100925All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2797666Open in IMG/M
Ga0104873_101126All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria subflava6734Open in IMG/M
Ga0104873_109567All Organisms → cellular organisms → Bacteria1360Open in IMG/M
Ga0104873_112400All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1106Open in IMG/M
Ga0104873_113564All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21028Open in IMG/M
Ga0104873_116780Not Available865Open in IMG/M
Ga0104873_120492All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales732Open in IMG/M
Ga0104873_130290All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104873_100016Ga0104873_1000168F053092MQSDQGLILCLTHTLLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104873_100102Ga0104873_10010215F047508MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0104873_100334Ga0104873_1003344F045567VRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0104873_100341Ga0104873_1003415F094006MWSALEPAGPTGALYESAVCVEAHIGYLQTGGIACRGLFAFGRRDLLAVAELGAEAPHAINMYDIALCKPLSELFGEELEYAFNFGA*
Ga0104873_100611Ga0104873_1006117F043235VQAQIFSLSQALKHGIGDCPDTDLKRISIVDEFSTQLTDALLDRPDGSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRRLRSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVYSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSAH*
Ga0104873_100683Ga0104873_1006835F090517MNRRILSFCGLLLGLLFLASSCKSKKDTPRLQLSSVELRQTAWYGTLEYKNPKRDNYSVYLNFLSDSEVEVIADDWIDPTDSQVRYYYTITDGIFTLKAQVNRELHPQMDQDTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0104873_100925Ga0104873_1009256F040149VADEGAEELRWEVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLTPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0104873_101126Ga0104873_1011262F103431MIDLDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0104873_109567Ga0104873_1095673F054109MVGRPKCKKGVKVHTAFKIYPSDKERAQAMADKLGMSLSAYINRAVLEKVERDEKSEA*
Ga0104873_112400Ga0104873_1124001F046433LNTLFFLQNEFLYFMKMIEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEECEGRLKVYAGRGEIDKSSKILFLDDWIIGGDQVKERIAGFEAYNNPGAHKVSVLVIAASSKYIDNGIGADPLCGKATYPVEAYYRLKNDHDDCGMSRVTGIHSSTDRTFGCEVDDIAYLAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKE*
Ga0104873_113564Ga0104873_1135641F105380QGRIFKKFESNLLDSYMDGRQTQYNINLADLDDQISDGIVYADKSGKMIYKFSAKKIVQTAITKDLTISGLADEFKMDYYSFWVPDIYLLSYSGFNPGNGLCLAYRKKYEEYICLTNIFPDRREQENSYFPNGKKLETKSICTGSMMADIDSAEYAAWKNDAVTRASQYVNKFLSARGNADLNFVSSSLRSKVPSHDMKKFAEFLGSITKEQENVNTYEEFIEWTKNTKWLK*
Ga0104873_116780Ga0104873_1167801F077405QGRALPTELFPRLLVAKQRGVFYGFISWCQIKFVKKFFD*
Ga0104873_120492Ga0104873_1204922F057446MNSISFGKTTITSYPEYFEIADNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0104873_130290Ga0104873_1302901F040685DSYGATSPDKALSSRFKLTNPLVNFVLQTFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLKDGPSEQAVDGQDKVIIIKTNKKTYRKMNAYGNDHDRKVWYDLLQIIAKEFGKKSIYE*
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