NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007305

3300007305: Human stool microbial communities from NIH, USA - visit 2, subject 158802708 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007305 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052711 | Ga0104872
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 158802708 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size172170219
Sequencing Scaffolds12
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides2
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039198Metagenome164Y
F051936Metagenome143N
F067720Metagenome125Y
F068941Metagenome124N
F072366Metagenome121N
F073656Metagenome120N
F074964Metagenome119N
F078004Metagenome117N
F082887Metagenome / Metatranscriptome113Y
F087335Metagenome110N
F090484Metagenome108N
F090514Metagenome108N
F097493Metagenome104Y
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0104872_100025All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales145602Open in IMG/M
Ga0104872_100338All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes58547Open in IMG/M
Ga0104872_100792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales34044Open in IMG/M
Ga0104872_101604All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides17602Open in IMG/M
Ga0104872_102199All Organisms → Viruses12685Open in IMG/M
Ga0104872_103254All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides8220Open in IMG/M
Ga0104872_104612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5380Open in IMG/M
Ga0104872_105768All Organisms → Viruses → Predicted Viral4216Open in IMG/M
Ga0104872_106849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3466Open in IMG/M
Ga0104872_110613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2216Open in IMG/M
Ga0104872_122025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1077Open in IMG/M
Ga0104872_134333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales699Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0104872_100025Ga0104872_100025114F074964MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVASLAKDKKRLVAVCSQMLPKVGDTFVKFTLYSKIYKDSKVNKEKGIENKEVKNIAYGEEYKPFGFASPEPLEGKNSAKWLTRETDEHRATYVATRIASYSIRTIAKCVSEYLAHESNQQ*
Ga0104872_100025Ga0104872_100025137F090484MIKISRRDSRIRFKNQKDLLHKLGISYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHGKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKNFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0104872_100025Ga0104872_100025156F099406MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASAETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPISGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0104872_100338Ga0104872_10033814F067720MASTTYRHPGDVTGMFAAQEQFRDITKMVCARFRDLTKTYHLGNANKMVTKCHRFTVLGNMVRNAGQLPQPFWLGAACGGGSHSLSASVARA*
Ga0104872_100792Ga0104872_1007927F087335VHNERRNDMIELYFNDANLLPENREEEQYAEATLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEKMYQRVSNYD*
Ga0104872_101034Ga0104872_10103424F078004LSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0104872_101604Ga0104872_10160417F051936EQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK*
Ga0104872_102199Ga0104872_1021992F082887MEKLKKIAKYATNILAIISALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK*
Ga0104872_103254Ga0104872_1032545F073656MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0104872_104612Ga0104872_1046123F090514MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPTGSRARAGSSLPLSPASIFF*
Ga0104872_105768Ga0104872_1057682F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG*
Ga0104872_106849Ga0104872_1068492F068941MNNKKFIIGVFLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNNSTLVKKGNFGVYNSNTNTSGIAYATSGTTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*
Ga0104872_110613Ga0104872_1106132F097493MKNGTAYFYERGVKIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDVTFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN*
Ga0104872_122025Ga0104872_1220251F039198MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILERIITKQVEINKNVC*
Ga0104872_134333Ga0104872_1343331F072366RYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRTKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSDFDDALTWYRDNGRKLLEAKKQDE*
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