NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007732

3300007732: Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 158883629 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007732 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052835 | Ga0105756
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 158883629 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size99017043
Sequencing Scaffolds19
Novel Protein Genes22
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F040685Metagenome161N
F042387Metagenome158N
F047127Metagenome150N
F051212Metagenome144N
F054111Metagenome140N
F059076Metagenome134N
F061926Metagenome131N
F061927Metagenome131N
F064819Metagenome128N
F081454Metagenome114N
F085821Metagenome111N
F089056Metagenome109N
F090516Metagenome108N
F092231Metagenome107Y
F097525Metagenome104N
F097526Metagenome104Y
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105756_100253All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes42819Open in IMG/M
Ga0105756_100285All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae39465Open in IMG/M
Ga0105756_100342All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae35077Open in IMG/M
Ga0105756_100402All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae30704Open in IMG/M
Ga0105756_100470All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae27763Open in IMG/M
Ga0105756_100756All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae20282Open in IMG/M
Ga0105756_102071All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga9066Open in IMG/M
Ga0105756_102276All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium8321Open in IMG/M
Ga0105756_102927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica6520Open in IMG/M
Ga0105756_103716All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga5125Open in IMG/M
Ga0105756_104179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia4474Open in IMG/M
Ga0105756_105591All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae3191Open in IMG/M
Ga0105756_106425All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2668Open in IMG/M
Ga0105756_107054All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.2384Open in IMG/M
Ga0105756_108698All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1856Open in IMG/M
Ga0105756_112491All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1193Open in IMG/M
Ga0105756_114493All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium988Open in IMG/M
Ga0105756_115801All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae882Open in IMG/M
Ga0105756_116351All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium844Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105756_100253Ga0105756_10025334F103434VVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0105756_100285Ga0105756_10028529F089056MNVFCKIILPLLCIISCSKIKEADNTKTLEKNYAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0105756_100342Ga0105756_10034236F042387MKRITLFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYEYSNGKLSSVIDEAVISDSGIQYKKVVTQEYHYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0105756_100402Ga0105756_1004022F040685MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGMALYSRQYTFNSLKKEFSAKPLMGQKEELSKEVSLPNTPKNWEAFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0105756_100402Ga0105756_1004023F040685MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSKKLLMRQNKDLPEEISLPNTTENWEAFTKKINLDKFKKLRDGPSEQAFGGQDKVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIITKEFGKKGIYE*
Ga0105756_100470Ga0105756_10047016F090516MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIAGIGFLPQDMSENSDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPAEEKVTSTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYEGVSEAMAEMMEYTHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0105756_100756Ga0105756_10075617F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNSK*
Ga0105756_100756Ga0105756_10075619F051212MKKFFFIFVLYWLHSCNGTEKAIATSSDTQKTSISEKQNAEKIERVIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKFSRLNNHLNLEK*
Ga0105756_100756Ga0105756_10075620F040685MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGASEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0105756_102071Ga0105756_10207115F097525MQQKKIMFKIQNAYQKIVFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTQVSECMLFSEVLGLLEWFEQISADKEKPAEIGFIEPELSFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKRE*
Ga0105756_102276Ga0105756_10227612F064819MILKDSQGKDRIKFSDIIRLNKEEPVFVKIKVRISTETMVSEENLDIERSDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQELEKYK*
Ga0105756_102927Ga0105756_1029277F092231MIIFPPQEFITWTNTLTQFPWPIQLNDFPPYAEKLGWKPTSLPDEFGVCPDKDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAEMNDHFVSCVAVGREAWGEPFLLEAGDGPSVTWRFPGDMFSQVTEGFTAVLFNFFTPEGRRQFL*
Ga0105756_103716Ga0105756_1037167F061927MKNSIFILSAMFILGACSSDSAQKVTEKIKNTYSDGLRKTFIEEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMD
Ga0105756_104179Ga0105756_1041796F092231MIIFPPQEFITWTGTLTQFPWPIQVDDFPPYAERLGWTPTPRPTWFNVLPDNDDEITMISSDREGNVRNLFLYTASNEAEDDEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFSQVTGGFTAVLFNFFTPEGRRQFL*
Ga0105756_105591Ga0105756_1055912F054111MVFKNLEKESMNKPLDNITHETFLKLIEHLKNLQEFTFLEYIMAPEADXXXXEKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILSLENQ*
Ga0105756_106425Ga0105756_1064254F059076MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE*
Ga0105756_107054Ga0105756_1070545F097526MTTNDTKAITIYTQDDYRQLCERLDDDTVTALLHAHIRAFAADGSRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHMGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHTAAASGNGEILAMLEDCQKILEQKNL*
Ga0105756_108698Ga0105756_1086982F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGTKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0105756_112491Ga0105756_1124911F059076MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0105756_114493Ga0105756_1144932F061926MIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLW
Ga0105756_115801Ga0105756_1158012F085821MNHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDVQKFKLLTADFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLYEYCRALLYTAETTESQQELVASSPDAQFKDLEKLG
Ga0105756_116351Ga0105756_1163511F081454MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQ
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