Sample 3300007909

Overview

Basic Information
IMG/M Taxon OID	3300007909 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131538 \| Ga0111548
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_2
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	134348971
Sequencing Scaffolds	10
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y
F030405	Metagenome / Metatranscriptome	185	Y
F035352	Metagenome / Metatranscriptome	172	Y
F036302	Metagenome	170	Y
F043481	Metagenome / Metatranscriptome	156	Y
F046737	Metagenome	151	Y
F056198	Metagenome	138	Y
F086687	Metagenome	110	Y
F092304	Metagenome	107	Y
F103182	Metagenome	101	Y
F105437	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F020363

Metagenome / Metatranscriptome

224

F030405

Metagenome / Metatranscriptome

185

F035352

Metagenome / Metatranscriptome

172

F036302

Metagenome

170

F043481

Metagenome / Metatranscriptome

156

F046737

Metagenome

151

F056198

Metagenome

138

F086687

Metagenome

110

F092304

Metagenome

107

F103182

Metagenome

101

F105437

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111548_1001814	All Organisms → cellular organisms → Archaea	5635	Open in IMG/M
Ga0111548_1002353	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	4827	Open in IMG/M
Ga0111548_1004198	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3424	Open in IMG/M
Ga0111548_1004313	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3362	Open in IMG/M
Ga0111548_1020538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium	1283	Open in IMG/M
Ga0111548_1025156	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1130	Open in IMG/M
Ga0111548_1026269	Not Available	1100	Open in IMG/M
Ga0111548_1027889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1060	Open in IMG/M
Ga0111548_1069911	Not Available	560	Open in IMG/M
Ga0111548_1071518	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	550	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0111548_1001814

All Organisms → cellular organisms → Archaea

5635

Open in IMG/M

Ga0111548_1002353

All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium

4827

Open in IMG/M

Ga0111548_1004198

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

3424

Open in IMG/M

Ga0111548_1004313

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

3362

Open in IMG/M

Ga0111548_1020538

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium

1283

Open in IMG/M

Ga0111548_1025156

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1130

Open in IMG/M

Ga0111548_1026269

Not Available

1100

Open in IMG/M

Ga0111548_1027889

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

1060

Open in IMG/M

Ga0111548_1069911

Not Available

560

Open in IMG/M

Ga0111548_1071518

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

550

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0111548_1001814	Ga0111548_10018146	F092304	MSQKDDKQLFESEVRESLEHKLVLRREAPLIGLTAFITALWGAKLFTAISPGSGLVFQLWGFNIHFHHFNYGFIFLVIALMLTFFEGPWFVRVQHLLFGSGLGLIVDEYWLLLTFDEHASNYFGPESQFISLIIAVIVTLLYAAIAVGVFFKSRKERKIWRRLYEAVK*
Ga0111548_1002353	Ga0111548_10023535	F036302	LTARQYGEVVLPDASIRAGFWYFSQKAITVQGGYGALFAVIVQILLSAGAIAVQF*
Ga0111548_1004198	Ga0111548_10041984	F105437	MKPEQLAKRIKELSAKLTFVPSEGIRIDFSSFTSPEQLVLLKNAELDERYRNRWTDQAVLENKELLVKGNQIVINRVVELFLFALPRALMLDEVEQWFFQKHFDLFLEGWIICKDNLSCWSEKNRQDFLLELKTNSTMKRGKSYGEEDKNYN*
Ga0111548_1004198	Ga0111548_10041985	F086687	MKTWQLNKKIDNLSQEIADPIKTEIKLDYNSFSEPERVLLDKVQEFIDKYAPGKPPRDVIVKNSALWVKGLEIFSRRTTELFVDIIPATFCCDELEEWYFKLYFYNFLQDWFEMVSKLRDMPKDQHQALLLERKEMGMLDKVFRFPKSGYETTNKKENAKQ*
Ga0111548_1004313	Ga0111548_10043132	F046737	MKSRIVTTSIKAILAFIVFAAILAACDNQQGMMHGGSGSTYMGNWNWIGILIGLAIGFLIGYLVARRRK*
Ga0111548_1020538	Ga0111548_10205383	F030405	DAMQGYDVVLFILALAKTVTPGGSPRREPGRAVPLTT*
Ga0111548_1025156	Ga0111548_10251563	F103182	VNGDNEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFIWLCRRPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFPPEVNIANPYTKLVEPES
Ga0111548_1026269	Ga0111548_10262693	F056198	RLHRAGSWYFSQKAVTVQGGYGALFAIMVQILLCAGAIAVQF*
Ga0111548_1027889	Ga0111548_10278892	F043481	MPLDIDLERGVRGFNIVRKECPNCNAELIFKIHKNEIHDVGGDGLFYPEENVVRCKVCMSTFKYKTINTDEPTKQ*
Ga0111548_1069911	Ga0111548_10699112	F020363	CRRVAVARVFALVMRCRVMRLLLFSRVGKNRDTSRGTPAGAGAGRTADHLTFFFSQKILAVRSANDIYRPVTVR*
Ga0111548_1071518	Ga0111548_10715181	F035352	RENYGTAPEIVLRNHLLTRKLNLSLNPDVIIEGSKIKNGLLLLKNGVDPNLKSYLPDNVKIVIDVKNNSAGCKELKNGKLEDPNKAQRLRFNELEALTNVKNYAVVVLSETLLPPKGPFKWRFKEEAIGKQNCKVFTLVARQMYPSGGLYLKANIEKMLQNAQMKKTEEIEKLIKYLQNI

Scaffold ID

Protein ID

Family

Sequence

Ga0111548_1001814

Ga0111548_10018146

F092304

MSQKDDKQLFESEVRESLEHKLVLRREAPLIGLTAFITALWGAKLFTAISPGSGLVFQLWGFNIHFHHFNYGFIFLVIALMLTFFEGPWFVRVQHLLFGSGLGLIVDEYWLLLTFDEHASNYFGPESQFISLIIAVIVTLLYAAIAVGVFFKSRKERKIWRRLYEAVK*

Ga0111548_1002353

Ga0111548_10023535

F036302

LTARQYGEVVLPDASIRAGFWYFSQKAITVQGGYGALFAVIVQILLSAGAIAVQF*

Ga0111548_1004198

Ga0111548_10041984

F105437

MKPEQLAKRIKELSAKLTFVPSEGIRIDFSSFTSPEQLVLLKNAELDERYRNRWTDQAVLENKELLVKGNQIVINRVVELFLFALPRALMLDEVEQWFFQKHFDLFLEGWIICKDNLSCWSEKNRQDFLLELKTNSTMKRGKSYGEEDKNYN*

Ga0111548_1004198

Ga0111548_10041985

F086687

MKTWQLNKKIDNLSQEIADPIKTEIKLDYNSFSEPERVLLDKVQEFIDKYAPGKPPRDVIVKNSALWVKGLEIFSRRTTELFVDIIPATFCCDELEEWYFKLYFYNFLQDWFEMVSKLRDMPKDQHQALLLERKEMGMLDKVFRFPKSGYETTNKKENAKQ*

Ga0111548_1004313

Ga0111548_10043132

F046737

MKSRIVTTSIKAILAFIVFAAILAACDNQQGMMHGGSGSTYMGNWNWIGILIGLAIGFLIGYLVARRRK*

Ga0111548_1020538

Ga0111548_10205383

F030405

DAMQGYDVVLFILALAKTVTPGGSPRREPGRAVPLTT*

Ga0111548_1025156

Ga0111548_10251563

F103182

VNGDNEVTKDHTKMTKIEVYKDYGVFSSQSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFIWLCRRPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFPPEVNIANPYTKLVEPES

Ga0111548_1026269

Ga0111548_10262693

F056198

RLHRAGSWYFSQKAVTVQGGYGALFAIMVQILLCAGAIAVQF*

Ga0111548_1027889

Ga0111548_10278892

F043481

MPLDIDLERGVRGFNIVRKECPNCNAELIFKIHKNEIHDVGGDGLFYPEENVVRCKVCMSTFKYKTINTDEPTKQ*

Ga0111548_1069911

Ga0111548_10699112

F020363

CRRVAVARVFALVMRCRVMRLLLFSRVGKNRDTSRGTPAGAGAGRTADHLTFFFSQKILAVRSANDIYRPVTVR*

Ga0111548_1071518

Ga0111548_10715181

F035352

RENYGTAPEIVLRNHLLTRKLNLSLNPDVIIEGSKIKNGLLLLKNGVDPNLKSYLPDNVKIVIDVKNNSAGCKELKNGKLEDPNKAQRLRFNELEALTNVKNYAVVVLSETLLPPKGPFKWRFKEEAIGKQNCKVFTLVARQMYPSGGLYLKANIEKMLQNAQMKKTEEIEKLIKYLQNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007909: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences