NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008152

3300008152: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008152 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053139 | Ga0114285
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size217475209
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella columbina1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F040685Metagenome161N
F042387Metagenome158N
F043990Metagenome155N
F043991Metagenome155N
F047127Metagenome150N
F049707Metagenome146N
F051212Metagenome144N
F054111Metagenome140N
F057446Metagenome136N
F059076Metagenome134N
F061926Metagenome131N
F061927Metagenome131N
F063777Metagenome129N
F064818Metagenome128N
F071327Metagenome122N
F071329Metagenome122N
F080165Metagenome115N
F084362Metagenome112N
F085821Metagenome111N
F089056Metagenome109N
F097525Metagenome104N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114285_1000219All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43603Open in IMG/M
Ga0114285_1000352All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes31875Open in IMG/M
Ga0114285_1000995All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae16548Open in IMG/M
Ga0114285_1002419All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae9386Open in IMG/M
Ga0114285_1002778All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella columbina8546Open in IMG/M
Ga0114285_1003123All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium7843Open in IMG/M
Ga0114285_1003223All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7634Open in IMG/M
Ga0114285_1004506All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae6007Open in IMG/M
Ga0114285_1004896Not Available5613Open in IMG/M
Ga0114285_1006069All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales4766Open in IMG/M
Ga0114285_1006174All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga4714Open in IMG/M
Ga0114285_1006524All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga4514Open in IMG/M
Ga0114285_1006911All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4320Open in IMG/M
Ga0114285_1007684All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga3964Open in IMG/M
Ga0114285_1012463All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2685Open in IMG/M
Ga0114285_1013047All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2592Open in IMG/M
Ga0114285_1034650All Organisms → Viruses1180Open in IMG/M
Ga0114285_1036286All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1136Open in IMG/M
Ga0114285_1038916All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris1072Open in IMG/M
Ga0114285_1047917All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae902Open in IMG/M
Ga0114285_1082201Not Available568Open in IMG/M
Ga0114285_1091665All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114285_1000219Ga0114285_100021933F043991MSKRNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPSWIGKYSQQMHFDLTDGTEVSFYKGRNVIYADILFSGGIRTILFKCRQKKNLTRFISRVLELSQGDPSNIHPDFRA*
Ga0114285_1000352Ga0114285_10003525F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWIVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKKN*
Ga0114285_1000995Ga0114285_10009952F059076MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE*
Ga0114285_1002419Ga0114285_10024192F063777LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHFNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0114285_1002778Ga0114285_10027788F061926MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0114285_1003123Ga0114285_10031232F080165MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEEDSLKYTFTRYILR*
Ga0114285_1003223Ga0114285_10032235F030786MLVVMIVTSSLQLLLKNGSATKGGNAMGTKKANKISFADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNKILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC*
Ga0114285_1004506Ga0114285_10045061F043990LELSLLGIVVYANHKIEKSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTQKEICIYYQIL*
Ga0114285_1004896Ga0114285_10048966F084362MNCTFTVRWSDENNKPHAKTYATEADARKAKQWLLERGVRDVDIAVRVNNKSAGGLQNDEKKSESTAEQKGFWWQE*
Ga0114285_1006069Ga0114285_10060694F042387MKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIKYSQAGEELGKTNYQYSNGKLSSVIDEAVISDSGIQYKRVVTREYHYNGSEVSMNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHDISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALATEFCSLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKSNFPIKMKLNIDNQTITTMVYEYNK*
Ga0114285_1006174Ga0114285_10061745F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114285_1006524Ga0114285_10065244F054111MNKSLESITHEEFLKLMERLKNLQGFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTSDRDLFLNILDKEILFLI*
Ga0114285_1006911Ga0114285_10069112F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGEKRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGEVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0114285_1007684Ga0114285_10076842F097525MQQKKIMFKIQNAHQKIIFSIHGHRKRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQILANQETPAEIGFIEPELAFEYKNKKLIVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKE*
Ga0114285_1012463Ga0114285_10124632F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLESNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0114285_1013047Ga0114285_10130472F040685MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0114285_1013047Ga0114285_10130474F040685MKKLLFKLFFALALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0114285_1013047Ga0114285_10130475F051212MKKFFFIFVLYWLHSCNGTEKAMATSPETQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0114285_1034650Ga0114285_10346502F105377VRDFNELPLLTPEEAFERAREMGWNRPLFDLDYRVRGPVDWKTLETLLRQYDVEDAVMASFGLKSFEEILDVISMLHERGWHLWQTSAKVYVGGELKAVQAIRARYPGD*
Ga0114285_1036286Ga0114285_10362861F061927ILLNLFLNYITMKNSIFILFAMLILGACSSDSAQKATEKIKNAYSDSLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0114285_1038916Ga0114285_10389161F089056QKFLIIRQKESVSIYLTMNLLSFLLDVFKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0114285_1047917Ga0114285_10479172F057446MNSISFGKTTITSYPEYFEIADNKKTNKRLYLSASLVFIVIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0114285_1082201Ga0114285_10822011F085821TFLVYDFFVAGNMPAVQLCIDYVVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0114285_1091665Ga0114285_10916651F071329SASETKGNMRPLYSKGNLMLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
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