NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008160

3300008160: Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008160 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053089 | Ga0114158
Sample NameHuman subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size135082819
Sequencing Scaffolds8
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040685Metagenome161N
F051212Metagenome144N
F051213Metagenome144N
F054111Metagenome140N
F061925Metagenome131N
F061927Metagenome131N
F063778Metagenome129Y
F064818Metagenome128N
F070224Metagenome123N
F081454Metagenome114N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114158_1000069All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae43055Open in IMG/M
Ga0114158_1000070All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae42937Open in IMG/M
Ga0114158_1000085All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae40357Open in IMG/M
Ga0114158_1001100All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales9983Open in IMG/M
Ga0114158_1006289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2829Open in IMG/M
Ga0114158_1031303All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas907Open in IMG/M
Ga0114158_1047319Not Available659Open in IMG/M
Ga0114158_1065534All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114158_1000069Ga0114158_10000695F064818MDKDEFLKELIAFIADNSSELHPKVFKNKIQFGINKSSYTEMRFDYSQNYKGFYLQLASYKKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEIGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114158_1000070Ga0114158_100007019F081454MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMEDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0114158_1000070Ga0114158_10000702F040685MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNASGNDRDREVWYDLLQIIAKEFGKKGVYE*
Ga0114158_1000070Ga0114158_10000703F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQVIDIKYSQLNNHLNLEK*
Ga0114158_1000085Ga0114158_10000859F061925LKICELFCSSTTDYIDWKNPKSIDSIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0114158_1001100Ga0114158_10011004F054111MNKSLESITHEEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI*
Ga0114158_1006289Ga0114158_10062892F063778MPETISEGAQQKLLQQLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAVEAYLKNCQVSINDAIGNIGAIPLDPPPDD*
Ga0114158_1031303Ga0114158_10313031F051213MNLYKILGALILALSFVFTSCDWVGNEPTIEGDRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIVGIKQLWVKTYLTKKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQDRSVFFVTSNNRTQSHRPNIVVTQKAK*
Ga0114158_1047319Ga0114158_10473191F070224SPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYHKGTGEEITKEVFDSIKFSRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYHHPEAYTVH*
Ga0114158_1065534Ga0114158_10655341F061927KTLIISINFFSLNLFLNYIIMKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
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