Sample 3300008634

3300008634: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615 reassembly

Overview

Basic Information
IMG/M Taxon OID	3300008634 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052993 \| Ga0111369
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	153023900
Sequencing Scaffolds	20
Novel Protein Genes	26
Associated Families	24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F080165	Metagenome	115	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097525	Metagenome	104	N
F103430	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111369_1000159	All Organisms → cellular organisms → Bacteria	70563	Open in IMG/M
Ga0111369_1000288	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	48645	Open in IMG/M
Ga0111369_1000347	Not Available	42766	Open in IMG/M
Ga0111369_1000376	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	40595	Open in IMG/M
Ga0111369_1000450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	36153	Open in IMG/M
Ga0111369_1000505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	33272	Open in IMG/M
Ga0111369_1000513	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	33082	Open in IMG/M
Ga0111369_1000640	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	27526	Open in IMG/M
Ga0111369_1000693	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	26059	Open in IMG/M
Ga0111369_1000865	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	22025	Open in IMG/M
Ga0111369_1000913	All Organisms → Viruses	20972	Open in IMG/M
Ga0111369_1000982	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19840	Open in IMG/M
Ga0111369_1001112	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	18038	Open in IMG/M
Ga0111369_1001191	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	17019	Open in IMG/M
Ga0111369_1001281	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	16008	Open in IMG/M
Ga0111369_1001397	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	14744	Open in IMG/M
Ga0111369_1001988	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	10800	Open in IMG/M
Ga0111369_1002373	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	9118	Open in IMG/M
Ga0111369_1002873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7498	Open in IMG/M
Ga0111369_1007714	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2885	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111369_1000159	Ga0111369_100015949	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVFLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHKRHVILRVFIEGSTYDIDPSIDIGLASTLPIAHWDSTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYIAIDKWLADTRAHQSS*
Ga0111369_1000159	Ga0111369_100015984	F095630	MRYSPLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFILSDIILTAKTYGDTCCMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKRDELMPNLRILQSSEWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSNKLFSECVLEYSVDEEHIKSPIDQALAAIVVQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKRIASQLKSEFAAYIQYLLKLPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0111369_1000288	Ga0111369_100028829	F061925	MSWEYSFNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPEPMDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEVTLEHIFRSVI*
Ga0111369_1000288	Ga0111369_100028851	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYDEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE*
Ga0111369_1000347	Ga0111369_100034758	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVMNTLSELKEVLDQEAIAYQIENDLQLI*
Ga0111369_1000376	Ga0111369_100037630	F095632	MTMSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN*
Ga0111369_1000376	Ga0111369_10003768	F049707	VVSEYKSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYEPDTGWTVWHFRLDDGRIMTFRALEWEQKDDVNHLTTIYFVPKEKRDS*
Ga0111369_1000450	Ga0111369_100045011	F063777	LKVLNIKISALPPENNSFWMRLLFYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKISKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCVKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQENIGNYILLQNLILEDNQLKNQLISFDKNTGKMRVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0111369_1000505	Ga0111369_100050530	F059076	MTNRILLLGLLLGGISTNAQTINEINAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVGSAMDADLGGNTATSTSYTDYRPLMVDAVGDVYRGLPINNMSILTLTISNVKGDWIASFDTGIDYDKYAVAIMSATFKMPAPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGQLVNGTWVITLLVGKRDAVNFTELEFPQGGANSGIGTSNPTYRAGLESFLQKLE*
Ga0111369_1000513	Ga0111369_100051319	F089056	MFLKTQKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLECKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0111369_1000640	Ga0111369_100064012	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI*
Ga0111369_1000693	Ga0111369_10006932	F043990	MKKKIFIFTVVCILPVVIILPIINNKIECYGIERNFGVNMSDIGFNEKYREEEWAPNGDGKKIIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDGDFGILIVDLKNKEICIYYQIF*
Ga0111369_1000865	Ga0111369_100086515	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEKDSLKYTFTRYILR*
Ga0111369_1000913	Ga0111369_10009136	F105377	VRSEVRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDITVASFGLKRFEEILDAIAMMHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI*
Ga0111369_1000982	Ga0111369_100098212	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFISERIILLWQSRAPPVLS*
Ga0111369_1001112	Ga0111369_10011123	F047127	MKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDSDIREILEKYNSK*
Ga0111369_1001112	Ga0111369_10011125	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVVNKKNITNLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSKLNNHLNLEK*
Ga0111369_1001112	Ga0111369_10011127	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELSKEISLPNTPKNWEAFTKKINLNKFKELRDGPSEQAFGGHDKVIIIKTDKKTYRKMNAYGNDHDRETWYDLLQIITEEFEKI*
Ga0111369_1001112	Ga0111369_10011128	F040685	MKKLLFKLFFALTFASISLHGQEKIQQVEFSSFGGRAVYSSRYTLNSLKKEFSKKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLREGPCQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLKIIAKEFGKKSIYE*
Ga0111369_1001191	Ga0111369_10011917	F054111	MVFNNLEKESMNKPMDSITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0111369_1001281	Ga0111369_100128115	F030786	MLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0111369_1001397	Ga0111369_100139710	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0111369_1001988	Ga0111369_10019889	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEVVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIVTFSKEISQEIEKCK*
Ga0111369_1002373	Ga0111369_10023734	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATEIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0111369_1002873	Ga0111369_10028739	F057446	MNSISFGKTTVTSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNEFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0111369_1007714	Ga0111369_10077143	F059076	MTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008634: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences