NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008635

3300008635: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763901136 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008635 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053336 | Ga0115679
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763901136 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size133578275
Sequencing Scaffolds21
Novel Protein Genes25
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2751
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F040685Metagenome161N
F041827Metagenome159Y
F045567Metagenome152N
F046431Metagenome151Y
F049707Metagenome146N
F051211Metagenome144N
F054109Metagenome140N
F063778Metagenome129Y
F070224Metagenome123N
F077403Metagenome117N
F085821Metagenome111N
F090516Metagenome108N
F092231Metagenome107Y
F095632Metagenome105N
F097490Metagenome104N
F101358Metagenome102Y
F103431Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115679_100001All Organisms → cellular organisms → Bacteria468540Open in IMG/M
Ga0115679_100007Not Available251830Open in IMG/M
Ga0115679_100042All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae96455Open in IMG/M
Ga0115679_100182All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44552Open in IMG/M
Ga0115679_100198All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae42100Open in IMG/M
Ga0115679_100305Not Available33436Open in IMG/M
Ga0115679_100632All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae20651Open in IMG/M
Ga0115679_101175All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27913261Open in IMG/M
Ga0115679_102049All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria8616Open in IMG/M
Ga0115679_102881All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis6596Open in IMG/M
Ga0115679_104081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces4905Open in IMG/M
Ga0115679_105992Not Available3557Open in IMG/M
Ga0115679_106689All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2753233Open in IMG/M
Ga0115679_107070Not Available3078Open in IMG/M
Ga0115679_110161All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2220Open in IMG/M
Ga0115679_110914All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia2087Open in IMG/M
Ga0115679_111213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia2035Open in IMG/M
Ga0115679_111331All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2017Open in IMG/M
Ga0115679_116093All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga1479Open in IMG/M
Ga0115679_137231All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes690Open in IMG/M
Ga0115679_141094All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium626Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115679_100001Ga0115679_100001456F051211MRVKKAIRIFEKIRNLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSSTAAMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS*
Ga0115679_100007Ga0115679_100007230F054109MIKEKINMTGRPKSKRGVKVHTAFKIYPKDKERAQAMAEKLDISLSSYINKAVLEKLAHDEKSEA*
Ga0115679_100042Ga0115679_10004282F040685MKKLLFKLFFALAFVSISLHGQEKIQQVEFSSFGGRAVYSSQYTLNSLKKEFSKKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKELREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKSIYE*
Ga0115679_100182Ga0115679_10018210F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIDRKEN*
Ga0115679_100182Ga0115679_10018231F095632MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLSETIDSLQTSQTN*
Ga0115679_100198Ga0115679_1001982F097490MNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGEIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYMEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0115679_100305Ga0115679_1003053F054109MAGRPKSKKGVKVHTAFKIYPDDKARVQAMADKLDLSLSSYINKAVLEKVERDEKSEN*
Ga0115679_100632Ga0115679_1006326F090516MKSNLSTELFFAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYYDLENDAETSDYYKEYELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLVDFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0115679_101175Ga0115679_1011753F045567MVTEDVVHTGTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHG*
Ga0115679_102049Ga0115679_1020498F103431MINLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNATAAAFDGAFGEDIADCHAEDDNDKNAESQKEGFHVCIPEG*
Ga0115679_102881Ga0115679_1028817F101358MTEKHSASLPPRQPEHLLTQPITTDGTPQERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREITDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNVDFTNAYLQKAYGVMMEGGKLQPVADTTHATTSSQEQQTEVLPAQGEDAHDHLGGDSARQLVGSVAAKASGGEMDNSPLVQRALERVR*
Ga0115679_104081Ga0115679_1040816F063778MPETISEGAKQQLLQQLQNALGLVKDADTSAQDVAAITHSAADGHQLTQVMLQELTTAREYLKACADQINYAISNIEAIPIDPPPGD*
Ga0115679_105992Ga0115679_1059922F077403MCTVYAEGRISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWYFMLPDWQASAQLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0115679_106689Ga0115679_1066892F070224MRRLLFLLLTLLHCTAWSQVYNAPDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSEDNNFMVVGSGDSLVIENFFAYYAIGFPEMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRTSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYIDYDHPEAHMIH*
Ga0115679_106689Ga0115679_1066893F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENGFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0115679_107070Ga0115679_1070703F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEEHVRIDHAYIAYTDEELERARSAEKESEN*
Ga0115679_107070Ga0115679_1070705F022002DGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFAFGDLEILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0115679_110161Ga0115679_1101613F085821MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLDLWYESNKRLLLEQDKGKHDEAYIDTWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTES*
Ga0115679_110914Ga0115679_1109143F092231MIIFPPQEFITWANMLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNNNKFAMLGSNKEGNVYNLYLHMAVNEADDVEGAVELNDNLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGR*
Ga0115679_111213Ga0115679_1112132F092231MIIFPPQEFITWTDTLTQFPWPIQVDDFPPYAEKLGWTPTPRPTWFNVKANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAAELNDHFVTCVAAGRKAWGEPFLLEAGEDPAATWRFPGDMFAQVAGGFTAVLFNFFTPEGRRQFL*
Ga0115679_111331Ga0115679_1113311F041827MKHFLSALALGCLLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGVHARVHNDPTYDEYLYEISADRSYIKEE*
Ga0115679_111331Ga0115679_1113312F041827ALGCLLLSCNRDIENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSKLLSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0115679_116093Ga0115679_1160932F085821MNNVFEQLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLIAQGYPTAENKKKFLNWIFMEPVYYLKYFISDASIQKKLHHDLLNLWYESGKRQILEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNICLLDEYCRALLYTAETTESQQELVAQTQNHIALLKDLYKKVNKIK*
Ga0115679_137231Ga0115679_1372312F018385MADLINSWLPYQELSIEKDRDPVLDDPIIYGNNVKNFTVTVYSPDGRVSKYWNARILKDLTGYCRIACPRDGKILNFNWFNWTVYMFSQSGMNALVFMPDSGKRTVTSLSKEVK*
Ga0115679_141094Ga0115679_1410941F046431KIGITIILILSVIISYGSVIISKAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKAWMEGRNSK*
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