NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008645

3300008645: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008645 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052997 | Ga0111425
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size135064643
Sequencing Scaffolds13
Novel Protein Genes17
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4
Not Available4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F040685Metagenome161N
F041827Metagenome159Y
F047127Metagenome150N
F058221Metagenome135N
F061925Metagenome131N
F061927Metagenome131N
F063777Metagenome129N
F070224Metagenome123N
F071329Metagenome122N
F097527Metagenome104N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111425_101488All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales11718Open in IMG/M
Ga0111425_103430All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis6575Open in IMG/M
Ga0111425_104285All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae5477Open in IMG/M
Ga0111425_104483All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae5276Open in IMG/M
Ga0111425_105604All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4320Open in IMG/M
Ga0111425_108906All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2831Open in IMG/M
Ga0111425_125175Not Available987Open in IMG/M
Ga0111425_129731All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2832Open in IMG/M
Ga0111425_130394All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes814Open in IMG/M
Ga0111425_130850Not Available802Open in IMG/M
Ga0111425_135068All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales703Open in IMG/M
Ga0111425_135390Not Available696Open in IMG/M
Ga0111425_140361Not Available611Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111425_101488Ga0111425_1014885F041827LSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0111425_103430Ga0111425_1034301F097527MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGH
Ga0111425_103890Ga0111425_1038906F041827VGKSDIDYEYDTYGRIIKERRFSYNHTQNFETNITYQYDGQGRITSSHAISSKKHPACSVERKHTYTYQGNKVIVKIERGADNCSSTPKAAKEKTITLFVENGRVVKSLNENNEIIETIEYLNTKNALRNIKGFPALVAEFYIREFTYELPFYNGIEHIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE*
Ga0111425_104285Ga0111425_1042855F040685MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSRYTLNSLKKEFSAKPLMGQNKDLPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSEQAVDGQDAVIIIKTDKKTYRKMNASGNDHDREVWYGLLQIIAKEFGKKGVYE*
Ga0111425_104483Ga0111425_1044833F040685MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGRAVYSSRYTLNSLKKEFSTKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKELREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIITKEFGKKGIYE*
Ga0111425_104483Ga0111425_1044835F040685MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILQLNPPDKWRVFTKKINLDKFKKLRDGPSEQTVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0111425_104483Ga0111425_1044838F047127MKKTFAFILLIIISLVKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK*
Ga0111425_105604Ga0111425_1056044F063777MKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPYENSQEYKIFNDFCAKSNEHLNDDDGYIFYKLTDEKSATDLNEAIISEFQEDIGNYILLQNLILEDNQLXXXXNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0111425_108906Ga0111425_1089061F061927FFSLNLFLNYIIMKNPIFILSVMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*
Ga0111425_108906Ga0111425_1089065F058221DLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0111425_125175Ga0111425_1251751F022002QDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKSIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0111425_129731Ga0111425_1297311F105380MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRTSVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKDY
Ga0111425_130394Ga0111425_1303941F071329ASETRGNMRPRYSKGILMLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED*
Ga0111425_130850Ga0111425_1308502F061925TNIRNNPMSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0111425_135068Ga0111425_1350681F058221FTMKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLAQNASFLANKFLLPSLEAGSAKLLTNVLLKKVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0111425_135390Ga0111425_1353902F022002NRTISGLTLGVTTPAQARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELDRARSAEKESEI*
Ga0111425_140361Ga0111425_1403611F070224IYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
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