NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008729

3300008729: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008729 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053053 | Ga0113885
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67227661
Sequencing Scaffolds18
Novel Protein Genes22
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae7
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F030786Metagenome184N
F036281Metagenome170N
F040685Metagenome161N
F041827Metagenome159Y
F042387Metagenome158N
F043990Metagenome155N
F047127Metagenome150N
F049707Metagenome146N
F051212Metagenome144N
F051214Metagenome144N
F057446Metagenome136N
F058221Metagenome135N
F059076Metagenome134N
F061927Metagenome131N
F063778Metagenome129Y
F064819Metagenome128N
F067847Metagenome125N
F070224Metagenome123N
F071329Metagenome122N
F095632Metagenome105N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0113885_100066All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43941Open in IMG/M
Ga0113885_100170All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales24751Open in IMG/M
Ga0113885_100239All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae19777Open in IMG/M
Ga0113885_100596All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae10154Open in IMG/M
Ga0113885_100614All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9971Open in IMG/M
Ga0113885_100655All Organisms → Viruses9505Open in IMG/M
Ga0113885_100661All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae9448Open in IMG/M
Ga0113885_100835All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7860Open in IMG/M
Ga0113885_100870All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae7658Open in IMG/M
Ga0113885_101001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae6912Open in IMG/M
Ga0113885_101108All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae6505Open in IMG/M
Ga0113885_101707All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae4804Open in IMG/M
Ga0113885_101746All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales4726Open in IMG/M
Ga0113885_103418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2809Open in IMG/M
Ga0113885_105741All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1927Open in IMG/M
Ga0113885_115588All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes844Open in IMG/M
Ga0113885_120698Not Available663Open in IMG/M
Ga0113885_128062Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0113885_100066Ga0113885_10006628F067847MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPGLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL*
Ga0113885_100066Ga0113885_10006637F071329MLPVAKIIIAGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0113885_100066Ga0113885_10006643F036281MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNVEGVITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF*
Ga0113885_100170Ga0113885_10017021F030786MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLRVDC*
Ga0113885_100239Ga0113885_10023917F047127MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0113885_100239Ga0113885_10023919F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTDGKNVHLVITKDSIIYRLTEVVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK*
Ga0113885_100239Ga0113885_10023920F040685MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLNKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0113885_100596Ga0113885_1005963F043990MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWVPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTTRKEICIYNQIF*
Ga0113885_100614Ga0113885_10061411F049707VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPDTGWTVWYFRLEDGRVMTFRALEWEQRDDVNHLTTIYFAPKQKENS*
Ga0113885_100655Ga0113885_1006553F105377VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYAVEDSVIASFGLKRFEEIFDAFAMMSERGWRLWQTSANAYVDGELRTVPAIGAHYRGL*
Ga0113885_100661Ga0113885_1006611F059076KVGINTTSPTRTLTIKNSTANDGKPLLRLVDAPIYNKNISSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE*
Ga0113885_100835Ga0113885_1008353F051214MGYRSLKGAHMPGKIVAHHTHLRIDTEFIELKDCFEAFRRGVEYKEKNDIDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENITLKPIYIYNNREYQIACEFLRQILHDKIDLKKEWLV*
Ga0113885_100870Ga0113885_1008703F042387MKRIILFFMTGLFLISCSRENDKMTNETLANSAKMQLPTKVIIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNRKLSSVIDEVVISDSGIQYKKVITREYSYNSSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVIDEEVTYDAKNSSYKNIKGFPVLAVEFCGLDKDENTIADYMNFRWVNHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKAKLDINNQTVTTMVYEYNK*
Ga0113885_101001Ga0113885_1010016F061927MKKSIFILSVMFILGACSSDSAQKATEKIKNTYSEGLRKTFIKEGIKSCIENSGLKESEAREYCKCAMNKLNESLSNDEIVDISMDNSPKDLDNRIEKAISSCIGE*
Ga0113885_101108Ga0113885_10110810F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLTNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0113885_101707Ga0113885_1017071F057446MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQLWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0113885_101746Ga0113885_1017466F041827MKHFLSALALGCLLLSCNRDLENNETPAPAPQNEKLVLLKELYGEQGRAYFSYKNRNEIESLSAEGGLGKVDINYEYDAYGRIVREFRDWHNYSDADTNITYQYDSQGRLVSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFIENGRVVKSLDENNEVIETIEYLNPKNTLRNIKGFPALVVEFYIRPFTYELPFYNDIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEIEKITVYEKSHNDPTHDNYLFSVSPSRYYIKEE*
Ga0113885_103418Ga0113885_1034182F063778MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPED*
Ga0113885_105741Ga0113885_1057413F064819MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIEKCK*
Ga0113885_115588Ga0113885_1155882F095632MRPIKKGMTVSFKETTGYKVVNFVASITASITAGAVVSALCPPAGMALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN*
Ga0113885_120698Ga0113885_1206981F070224MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0113885_128062Ga0113885_1280621F022002DGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKYEGHVGFKDAYITYSDDELDRARSAEKESEI*
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