Sample 3300008743

Overview

Basic Information
IMG/M Taxon OID	3300008743 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053067 \| Ga0114022
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	191034425
Sequencing Scaffolds	10
Novel Protein Genes	12
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F049707	Metagenome	146	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F084362	Metagenome	112	N
F092230	Metagenome	107	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F040685

Metagenome

161

F049707

Metagenome

146

F063777

Metagenome

129

F063778

Metagenome

129

F064818

Metagenome

128

F084362

Metagenome

112

F092230

Metagenome

107

F095632

Metagenome

105

F097526

Metagenome

104

F101360

Metagenome

102

F103434

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0114022_1000037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	100149	Open in IMG/M
Ga0114022_1000100	Not Available	64776	Open in IMG/M
Ga0114022_1000253	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42715	Open in IMG/M
Ga0114022_1000261	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	41771	Open in IMG/M
Ga0114022_1000648	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	23475	Open in IMG/M
Ga0114022_1000839	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19981	Open in IMG/M
Ga0114022_1000895	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	18909	Open in IMG/M
Ga0114022_1009030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3287	Open in IMG/M
Ga0114022_1016015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2057	Open in IMG/M
Ga0114022_1026740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1308	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0114022_1000037

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

100149

Open in IMG/M

Ga0114022_1000100

Not Available

64776

Open in IMG/M

Ga0114022_1000253

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

42715

Open in IMG/M

Ga0114022_1000261

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

41771

Open in IMG/M

Ga0114022_1000648

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

23475

Open in IMG/M

Ga0114022_1000839

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

19981

Open in IMG/M

Ga0114022_1000895

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae

18909

Open in IMG/M

Ga0114022_1009030

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces

3287

Open in IMG/M

Ga0114022_1016015

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

2057

Open in IMG/M

Ga0114022_1026740

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

1308

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0114022_1000037	Ga0114022_10000372	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0114022_1000037	Ga0114022_100003787	F063777	LKVLNIKISALPPENNSFWMKLLLFLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLANIKDFFWLDFDSETKTINSYNNKEQIEIAISE*
Ga0114022_1000100	Ga0114022_100010067	F084362	MNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*
Ga0114022_1000253	Ga0114022_100025323	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN*
Ga0114022_1000253	Ga0114022_10002536	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0114022_1000261	Ga0114022_100026138	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLVSYNKDVGDFFEQEMGNAFLKMLENESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQTNHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114022_1000648	Ga0114022_10006485	F103434	MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRIIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK*
Ga0114022_1000839	Ga0114022_10008398	F101360	VSKEDALRRAVIAAHVAKVASQEKKKALKKLEEVMVPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKAFVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTPNPRISARVSPAQEEAIQELIATGDISLIEIEAPE*
Ga0114022_1000895	Ga0114022_100089519	F040685	MKKLLFKLFFTLAFTSISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNMPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYNLLQIIAKEFGKKSIYE*
Ga0114022_1009030	Ga0114022_10090306	F063778	SEEAKQELLQKLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTTARGYLKACADQIEYAISNVKAIPLDPPPED*
Ga0114022_1016015	Ga0114022_10160153	F097526	MATTIYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAGEMEKAGRNGHPTPEEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCERNGRSDTELPVARNDAYGFAAALRDIPLTAPQINLLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQ*
Ga0114022_1026740	Ga0114022_10267403	F092230	MVDKLKTHLLKAFLPLFIVCIIFVAFFRQIDCGSEWGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNQNEDGLSIYLLLSGGEYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSAGEVQNTEEREALNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILITIVIIAGYYSYLNPETVYEFYCKLRRKEKYSSDVNLVKRIGFLTIILPPCMLFLLIL*

Scaffold ID

Protein ID

Family

Sequence

Ga0114022_1000037

Ga0114022_10000372

F040685

MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*

Ga0114022_1000037

Ga0114022_100003787

F063777

LKVLNIKISALPPENNSFWMKLLLFLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGDYILLQNLILEDNQLKNQLISFNKNTGKITVLANIKDFFWLDFDSETKTINSYNNKEQIEIAISE*

Ga0114022_1000100

Ga0114022_100010067

F084362

MNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK*

Ga0114022_1000253

Ga0114022_100025323

F095632

MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQNN*

Ga0114022_1000253

Ga0114022_10002536

F049707

VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWDQKDDVNHLTTIWMRPSLYDIERKTS*

Ga0114022_1000261

Ga0114022_100026138

F064818

MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLVSYNKDVGDFFEQEMGNAFLKMLENESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQTNHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*

Ga0114022_1000648

Ga0114022_10006485

F103434

MVTFRPRRGRYLENGPHAVEVTVAIVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKATENRIIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVRCDTLGTVAK*

Ga0114022_1000839

Ga0114022_10008398

F101360

VSKEDALRRAVIAAHVAKVASQEKKKALKKLEEVMVPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKAFVAWLEWNKPDAVHKVPAPWFVAATSLDGFIKQTGEIPDGVELVTPNPRISARVSPAQEEAIQELIATGDISLIEIEAPE*

Ga0114022_1000895

Ga0114022_100089519

F040685

MKKLLFKLFFTLAFTSISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNMPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYNLLQIIAKEFGKKSIYE*

Ga0114022_1009030

Ga0114022_10090306

F063778

SEEAKQELLQKLQDALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTTARGYLKACADQIEYAISNVKAIPLDPPPED*

Ga0114022_1016015

Ga0114022_10160153

F097526

MATTIYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAGEMEKAGRNGHPTPEEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCERNGRSDTELPVARNDAYGFAAALRDIPLTAPQINLLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQ*

Ga0114022_1026740

Ga0114022_10267403

F092230

MVDKLKTHLLKAFLPLFIVCIIFVAFFRQIDCGSEWGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNQNEDGLSIYLLLSGGEYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSAGEVQNTEEREALNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILITIVIIAGYYSYLNPETVYEFYCKLRRKEKYSSDVNLVKRIGFLTIILPPCMLFLLIL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008743: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences