NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009406

3300009406: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_1 SPAdes



Overview

Basic Information
IMG/M Taxon OID3300009406 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118143 | Gp0128401 | Ga0116587
Sample NameMicrobial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_1 SPAdes
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Liverpool
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size195220738
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → unclassified viruses → Virus sp.2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationUnited Kingdom
CoordinatesLat. (o)54.9632021Long. (o)-1.6348029Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000754Metagenome / Metatranscriptome906Y
F001416Metagenome / Metatranscriptome699Y
F003678Metagenome / Metatranscriptome474Y
F021727Metagenome217Y
F025348Metagenome / Metatranscriptome202N
F030486Metagenome / Metatranscriptome185Y
F032176Metagenome / Metatranscriptome180Y
F048675Metagenome148Y
F060461Metagenome133Y
F088780Metagenome109Y
F096823Metagenome104N
F103182Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116587_1004075All Organisms → Viruses → unclassified viruses → Virus sp.2512Open in IMG/M
Ga0116587_1004981All Organisms → Viruses → unclassified viruses → Virus sp.2221Open in IMG/M
Ga0116587_1017852All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1116Open in IMG/M
Ga0116587_1022566All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon997Open in IMG/M
Ga0116587_1040003Not Available767Open in IMG/M
Ga0116587_1047965All Organisms → cellular organisms → Bacteria → Proteobacteria709Open in IMG/M
Ga0116587_1061072All Organisms → cellular organisms → Archaea641Open in IMG/M
Ga0116587_1064513Not Available626Open in IMG/M
Ga0116587_1069070Not Available608Open in IMG/M
Ga0116587_1077564Not Available578Open in IMG/M
Ga0116587_1091138All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae538Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116587_1004075Ga0116587_10040751F000754MDFNVNNAEFSKNASVSALVTGEPFGWNGNYVMNDMVSQGAVRNRPVITFTNGTAATRTVDVAVFIGG*
Ga0116587_1004075Ga0116587_10040755F001416MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYVMND
Ga0116587_1004981Ga0116587_10049811F003678MDQFMLYAPLIFATIALFLCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQRQPNQQMNGGIQHNNKNLGG*
Ga0116587_1017852Ga0116587_10178521F103182MDYKEETKDHTKMTKEEVFKDYGNVLSGVKSRSKIKTRRPPKKLKQCYKCGRVGDEMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGIKMTQEEKAALKRQPPCSIQFPTENNIANPYTKLIEPESLYEQKFKQSFKRINSENKET*
Ga0116587_1022566Ga0116587_10225661F060461MNAKQFFRIEVSIGWGHLIRERKTLTKDEETVREARRTYRDGIKKAWDIYTQDNLMVKEAKKTLDSAIDEAYKLCLPEHGERMAQTEYEEATKLYFKTLYKVHRKFADTIGQICSVFIKDMETFRS
Ga0116587_1040003Ga0116587_10400031F030486PCMQHNVRRYVALVRQLADGGACFCTRGAIQGYAVICLLSRWQKP*
Ga0116587_1047965Ga0116587_10479651F048675MTARFTATLLRKALEKHMDRNEVLFTEPYAAAQSLKNDWTRLASTYGCIMVVLSRETLMIRPHWFAKWLISLLGLDLCHKIPITNIRGVTERGKWFSYGKIELHFVTTDGKNQRILLYMKKYQEFIGTAKNAMDK*
Ga0116587_1061072Ga0116587_10610721F088780MNLIKKFTRGLTVVAMAPLCGLENKERNRRLEERLK
Ga0116587_1064513Ga0116587_10645131F096823MKKALTFLMMTIMMVAVTTTISQTHKVYAENKAKDLCSQYDGEWNNGKCKIKNDEDKTDYEDELCDDPKDTKKYPKICKNN*
Ga0116587_1069070Ga0116587_10690701F021727MPNLDRWVNQNENMITKTINKFENHLLSIKTKRQKMIHPNSHPTYNERHEKSIEIIDWTLEKYTAAINIKKNQQVIIDNIIEELDNKRDITINKKKKALVKDEVSIYRLEEN
Ga0116587_1077564Ga0116587_10775641F025348SVGSVSRKWVGGTSMGNKERLKGILERQAAAAERERVDEEAASAKAEKVRSVRVEVIQKWQEQRAHLETYIAQINKETSKNDVQLFVVENPRHAHTGVGMEVDKMEVAFRQRTPHDKKLVISVRANGEAYVSISTSSVSQAKQYMLNVLEVTNEQLEATVLDFLDANTPR*
Ga0116587_1091138Ga0116587_10911381F032176ANVKGMGGAEGLDGTINVTAISETYPKGIGKAHDQGIFTMANGEMCILKGSDLMKMAAGSNPTAVGLWKFMTMSEKLNWMNDLIALVVFEAKDPMWMESTVTIYEWK*
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