Sample 3300009535

Overview

Basic Information
IMG/M Taxon OID	3300009535 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118459 \| Gp0139339 \| Ga0127526
Sample Name	Microbial communities of aphids from Calyophus hartwegii in Tucson, AZ, USA - Macrosiphum gaurae seqcov
Sequencing Status	Permanent Draft
Sequencing Center	University of Texas, Austin
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	265644161
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa
Type	Host-Associated
Taxonomy	Host-Associated → Arthropoda → Aphids → Unclassified → Unclassified → Calyophus Hartwegii → Host-Associated Microbial Communities Of Aphids From Plants In Several Locations Around Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal corpus

Location Information
Location	Tucson, AZ, USA
Coordinates	Lat. (^o)	32.23184	Long. (^o)	-110.950699	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029983	Metagenome	186	Y
F060091	Metagenome	133	Y

Family

Category

Number of Sequences

3D Structure?

F029983

Metagenome

186

F060091

Metagenome

133

Scaffold	Taxonomy	Length	IMG/M Link
Ga0127526_1003942	Not Available	1771	Open in IMG/M
Ga0127526_1007566	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini	6302	Open in IMG/M
Ga0127526_1008954	Not Available	1069	Open in IMG/M
Ga0127526_1029689	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum	1305	Open in IMG/M
Ga0127526_1060880	Not Available	1465	Open in IMG/M
Ga0127526_1077605	Not Available	2844	Open in IMG/M
Ga0127526_1089232	Not Available	1001	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0127526_1003942

Not Available

1771

Open in IMG/M

Ga0127526_1007566

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini

6302

Open in IMG/M

Ga0127526_1008954

Not Available

1069

1305

Not Available

1465

Open in IMG/M

Ga0127526_1077605

Not Available

2844

Open in IMG/M

Ga0127526_1089232

Not Available

1001

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0127526_1003942	Ga0127526_10039421	F029983	MSLYCTVGFKCRGCMDGVKFEFNNIIPLYKXNDSERKRS
Ga0127526_1007566	Ga0127526_10075664	F060091	MDELHDLNYKLDLSSESDSDEEMNELLLLYSLSKRNKSIWKSAYMKKRKSHGEFILTSEFSDKQFTNYFRLNRNQFNEVLSIVNDKIYLVGCNAQKPIDPEEKLAVFLR*
Ga0127526_1008954	Ga0127526_10089542	F029983	VGKWMSLXCTVDYKWVTLMDGFTFEFNDIISLYKQ
Ga0127526_1029689	Ga0127526_10296891	F029983	LCCTVGYKWVTVMDCVKFEFNXXISLYTKNDSER*
Ga0127526_1060880	Ga0127526_10608801	F029983	MSLCCTVGYKWITDHCIMDCIRFEFNDIISLYRYTKNDSERRRFV
Ga0127526_1077605	Ga0127526_10776051	F029983	MSLCYTXXYKWVTVMDFVKFELKDIISLYKXNDSERKR
Ga0127526_1089232	Ga0127526_10892321	F029983	MSLCCTVGYKWVTVMDDVKFESNXXISLYTKKILSENG

Scaffold ID

Protein ID

Family

Sequence

Ga0127526_1003942

Ga0127526_10039421

F029983

MSLYCTVGFKCRGCMDGVKFEFNNIIPLYKXNDSERKRS

Ga0127526_1007566

Ga0127526_10075664

F060091

MDELHDLNYKLDLSSESDSDEEMNELLLLYSLSKRNKSIWKSAYMKKRKSHGEFILTSEFSDKQFTNYFRLNRNQFNEVLSIVNDKIYLVGCNAQKPIDPEEKLAVFLR*

Ga0127526_1008954

Ga0127526_10089542

F029983

VGKWMSLXCTVDYKWVTLMDGFTFEFNDIISLYKQ

Ga0127526_1029689

Ga0127526_10296891

F029983

LCCTVGYKWVTVMDCVKFEFNXXISLYTKNDSER*

Ga0127526_1060880

Ga0127526_10608801

F029983

MSLCCTVGYKWITDHCIMDCIRFEFNDIISLYRYTKNDSERRRFV

Ga0127526_1077605

Ga0127526_10776051

F029983

MSLCYTXXYKWVTVMDFVKFELKDIISLYKXNDSERKR

Ga0127526_1089232

Ga0127526_10892321

F029983

MSLCCTVGYKWVTVMDDVKFESNXXISLYTKKILSENG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009535: Microbial communities of aphids from Calyophus hartwegii in Tucson, AZ, USA - Macrosiphum gaurae seqcov

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences