Basic Information | |
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IMG/M Taxon OID | 3300009719 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110190 | Gp0141789 | Ga0123383 |
Sample Name | Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_260_2m (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 7033440 |
Sequencing Scaffolds | 10 |
Novel Protein Genes | 13 |
Associated Families | 12 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus | 1 |
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus | 1 |
All Organisms → Viruses | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Louisana Shelf, Hypoxic Zone, Gulf of Mexico | |||||||
Coordinates | Lat. (o) | 28.8679 | Long. (o) | -90.4764 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000075 | Metagenome / Metatranscriptome | 2622 | Y |
F000826 | Metagenome / Metatranscriptome | 873 | Y |
F002870 | Metagenome / Metatranscriptome | 524 | Y |
F004408 | Metagenome / Metatranscriptome | 439 | Y |
F009292 | Metagenome / Metatranscriptome | 320 | Y |
F011139 | Metagenome / Metatranscriptome | 294 | Y |
F022637 | Metagenome / Metatranscriptome | 213 | Y |
F024806 | Metagenome / Metatranscriptome | 204 | Y |
F030104 | Metagenome / Metatranscriptome | 186 | Y |
F046392 | Metagenome / Metatranscriptome | 151 | Y |
F061886 | Metagenome / Metatranscriptome | 131 | Y |
F105151 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0123383_101703 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 814 | Open in IMG/M |
Ga0123383_105944 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio harveyi group → Vibrio parahaemolyticus | 821 | Open in IMG/M |
Ga0123383_107760 | All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage | 715 | Open in IMG/M |
Ga0123383_108774 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 643 | Open in IMG/M |
Ga0123383_109907 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus | 545 | Open in IMG/M |
Ga0123383_110514 | All Organisms → Viruses | 750 | Open in IMG/M |
Ga0123383_112936 | Not Available | 558 | Open in IMG/M |
Ga0123383_113041 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 649 | Open in IMG/M |
Ga0123383_113072 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 1082 | Open in IMG/M |
Ga0123383_113189 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1382 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0123383_101703 | Ga0123383_1017031 | F011139 | MGLFFIALAFLPVFYNFYNTYNKYVATIPMQNSILQTSAFILFIMSLYCTASMLPCGRYYYEPEGGYVGNP* |
Ga0123383_105944 | Ga0123383_1059441 | F105151 | MKFIQYCEDMLNISIQDVLDNYEKIKKDLERYNRDKNSELIQSLKEIDITKLSQKQLDNVVKFLRNVGDDEKTAYLLYILDNVTDVTNPKLKKFLLQFEDLLRTIKKINKPGSK* |
Ga0123383_107760 | Ga0123383_1077601 | F046392 | MSHIRIDKQKAVKKWAPVLENMGVAGERVDWMAEYAEFHSINENAYANASNVAGMGGV |
Ga0123383_107760 | Ga0123383_1077602 | F004408 | DMNFLKFLNKSQVDSFYALSNDEQETVKLHINERSYYTQKDVLSLIAEALSTKNESLEERVIRLMPENIKPIWEQLAETSKKSVLSQARLYPEEVLQTESQVEHFWNTRNLKKNESVTKKLVAHESLIQEDKISDNEAQAILERFKNL* |
Ga0123383_108660 | Ga0123383_1086601 | F000075 | KMKFFALAAVAAVSANQYDLMGEDELLAQLSSTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK* |
Ga0123383_108774 | Ga0123383_1087741 | F000826 | LIAAAAAVQRHHHHPHSVEYVATLPDVRADTVSDEDIAAHEAARAEAAKVKKNPQAELLATVKADLDQISKDLSFGVSYSQAKRNDHARGLVTKVTTAIKGYADGILAQVEAKTNESMTEQNAHNISAMIFYDVQVQEFASGLGMAIPDDYNLAINRLKTLQKLYLFEQKGGENYLA* |
Ga0123383_109907 | Ga0123383_1099071 | F061886 | MQYVANNPDGLSGEVIDRSKFRDHYTNEYVWVERNHITDVGVKYDGLSRAVDHKPSHWRCEDEIERGKEYKRLNDECADKIADNRYSIENSREWLVDNGGVVDRVHRMSAKTLKTRYDLDSIRRNMENLKSMRARLLKN* |
Ga0123383_110341 | Ga0123383_1103411 | F009292 | DTFNSILKGARDEKKDISDHYNITLTVMVKRIPESTATHTNDVFAGGKSLKDILDKGFPYDDGDNSIDDQTANWSKKNHKGQIQVGKLNGENVTKSALVNLIKDTDAPITQALVQLDKSDSDGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDSDGLFKLMDANVTR |
Ga0123383_110514 | Ga0123383_1105142 | F022637 | MSRTYRKQPLRNQFRHPRTFNEIRQKSEDYRDTGYTVNTRNRDIPTAWDDITASSIYQNDHQS* |
Ga0123383_112936 | Ga0123383_1129361 | F024806 | MVTNSDFNFTNNETVILELPFSEHIDELRQRLFHIFWIILGLTFISFIEVKLLVKILELPVDNVKFF |
Ga0123383_113041 | Ga0123383_1130411 | F002870 | FAKMTLAAMAVEAASVESAQSLVQQALLHVEAGSAAEMHLQSAMNAMAGTKFTDAEILEQHSQKVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKSRGEAKDTSDYYNVTVSMMIQRKPVEAAAAPAADPYAPNGAATLASTLDKGFPYDD* |
Ga0123383_113072 | Ga0123383_1130721 | F030104 | MALMAFDDDQEEVIEFMDTSFFNFFSLIIFYLCFKHSIHYFAFLEASVVEGRTVGFIAKQFFRDFLNTFSLMLRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTILFTLDNHDDRSFLLE |
Ga0123383_113189 | Ga0123383_1131891 | F011139 | MGLFFILLAFLPIFYNFYNVYHKYVATIPMQNSLLQTSFFIFFMMSLYCSASMLPCGRYYYEPEGGYVGNP* |
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