Sample 3300009945

3300009945: Combined Assembly of Gp0139326, Gp0139349, Gp0139350, Gp0139351

Overview

Basic Information
IMG/M Taxon OID	3300009945 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118704 \| Gp0139326 \| Ga0117932
Sample Name	Combined Assembly of Gp0139326, Gp0139349, Gp0139350, Gp0139351
Sequencing Status	Permanent Draft
Sequencing Center	University of Wisconsin, Madison
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	238746335
Sequencing Scaffolds	33
Novel Protein Genes	36
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon CG_4_8_14_3_um_filter_42_8	1
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	6
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Stable Isotope Probing Incubations Of Microbial Communities From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Water Column → Stable Isotope Probing Incubations Of Microbial Communities From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.71538	Long. (^o)	-110.73627	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y
F003098	Metagenome / Metatranscriptome	507	Y
F006410	Metagenome	374	Y
F006925	Metagenome	362	Y
F008219	Metagenome	337	Y
F011639	Metagenome	288	Y
F014829	Metagenome / Metatranscriptome	259	Y
F020112	Metagenome	226	Y
F024925	Metagenome / Metatranscriptome	204	Y
F026930	Metagenome / Metatranscriptome	196	Y
F027240	Metagenome / Metatranscriptome	195	Y
F038503	Metagenome	165	Y
F039196	Metagenome / Metatranscriptome	164	Y
F046219	Metagenome	151	Y
F050736	Metagenome / Metatranscriptome	145	Y
F051554	Metagenome	144	Y
F058600	Metagenome	134	Y
F063102	Metagenome	130	Y
F064893	Metagenome / Metatranscriptome	128	Y
F069685	Metagenome	123	Y
F073072	Metagenome	120	Y
F084026	Metagenome / Metatranscriptome	112	Y
F089535	Metagenome	109	N
F094604	Metagenome / Metatranscriptome	106	Y
F102445	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0117932_1002710	All Organisms → cellular organisms → Bacteria	14493	Open in IMG/M
Ga0117932_1007918	All Organisms → cellular organisms → Bacteria	2688	Open in IMG/M
Ga0117932_1015985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	967	Open in IMG/M
Ga0117932_1019102	All Organisms → cellular organisms → Bacteria	2743	Open in IMG/M
Ga0117932_1037544	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon CG_4_8_14_3_um_filter_42_8	3006	Open in IMG/M
Ga0117932_1038538	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
Ga0117932_1040898	Not Available	1047	Open in IMG/M
Ga0117932_1051735	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
Ga0117932_1070029	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
Ga0117932_1072457	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1439	Open in IMG/M
Ga0117932_1072749	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
Ga0117932_1078785	All Organisms → cellular organisms → Bacteria	3986	Open in IMG/M
Ga0117932_1079965	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
Ga0117932_1081384	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1165	Open in IMG/M
Ga0117932_1092879	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	814	Open in IMG/M
Ga0117932_1100441	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2653	Open in IMG/M
Ga0117932_1108565	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
Ga0117932_1111181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2898	Open in IMG/M
Ga0117932_1120643	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1036	Open in IMG/M
Ga0117932_1122922	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	748	Open in IMG/M
Ga0117932_1125950	All Organisms → cellular organisms → Archaea → TACK group	994	Open in IMG/M
Ga0117932_1153429	Not Available	598	Open in IMG/M
Ga0117932_1154196	All Organisms → cellular organisms → Bacteria → Acidobacteria	1005	Open in IMG/M
Ga0117932_1160102	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	680	Open in IMG/M
Ga0117932_1161243	Not Available	583	Open in IMG/M
Ga0117932_1168642	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
Ga0117932_1175078	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
Ga0117932_1176436	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	700	Open in IMG/M
Ga0117932_1178407	Not Available	520	Open in IMG/M
Ga0117932_1183853	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1340	Open in IMG/M
Ga0117932_1202386	Not Available	999	Open in IMG/M
Ga0117932_1216684	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	611	Open in IMG/M
Ga0117932_1218008	Not Available	615	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117932_1002710	Ga0117932_100271011	F064893	MSKIIRYEFMGSWFRFWLMCLTVIGIPFAVLYLIDGTLRMEHEIDDPERFVEAFRSGKLTKKS*
Ga0117932_1007918	Ga0117932_10079183	F039196	MSREQTFLLALGLLIAAAALVSAGGFVLLARDRRAGRATHHPEAAEER*
Ga0117932_1015985	Ga0117932_10159851	F027240	RAGIFAMTGLPGQPTGEVQGLKLVDVGPSILRLYGLEAPEGAVGRSFL*
Ga0117932_1019102	Ga0117932_10191023	F026930	MPLLSDPMFGQTMITLMAAIVLVLQITLVAQKSLVSSIYVFALQSFLLAAIAGTIAWF
Ga0117932_1037544	Ga0117932_10375443	F011639	MGEESVRVDKELVRPRLSYDERWLIYRLVDGQYWLLRRHPHPFWDFEEVAKLRRKWLRNLNKCRKPKYQISLRQRLY*
Ga0117932_1038538	Ga0117932_10385381	F001564	CPDAPDDGGRCDHCPLDRLDAAQASEPGQLLRRALDLRAALKLGVRLSLDEIAADEFHAMLIVEEEQPRFDDERAKCHG*
Ga0117932_1040898	Ga0117932_10408982	F058600	MDRIDKVLLVLPVLPAADLLSTFFSLSLGGQEVGILARPILEYYGPVGLVMLATFASITFLAFMEVVIYIKKLFARGEWKSWWTWYILAVPIYWFFVLEGFYVSTVVMNFLAPFSPLLTQTIILRAIIVGTYFLFVSVLTMPRMKQLPCF*
Ga0117932_1051735	Ga0117932_10517351	F001564	LCDPGLCPDAPEGSRCEHCPLDRLDVAQASEPGQLLRRALDLRAALKLGVKLSLDEIAMDEFQAMLIIEEEQ
Ga0117932_1070029	Ga0117932_10700292	F046219	LRRALDLRAALKMGVRICLDEIRADEFAALVKLEGEQAEFEREKAAMPPH*
Ga0117932_1072457	Ga0117932_10724571	F024925	MQTLVDEMSSCNSVEEAFALEKEQLDELFPEDYPWTIREVGDRLIDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKNQQKTWLCTLRKKTLDYVISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTAFLEKEERQLEK*
Ga0117932_1072749	Ga0117932_10727491	F046219	LRAALKLGVRIGLDEIRADEYRAMLTVEEERERLDRELFEDRRP*
Ga0117932_1078785	Ga0117932_10787853	F046219	LLRRALDLRAALKLGVRLDLDEIRADEFAAILLIAEEVDVLEKERLSGQMGPR*
Ga0117932_1079965	Ga0117932_10799651	F006410	KLKVSPEKQKERKERAKERNLILKEIKSQGPSTLDDLVKTTGIEKEKLFKHIIAMRQFGKIAIAGERDNQLVYGLPEGEETSKQ*
Ga0117932_1081384	Ga0117932_10813842	F014829	MQPVRVRERIAGTLHQYVGLRAGAGWAQDSLRGTASLSGRRKFNKFFYDGELVLRYPVRAGVGSVIPYVLGGAGAVTLHRLDTSTSEDFTKFAGNFGAGLEYRYQRIGVRAEGRDLVYKFDRFGFDKTQHGIVWDAGVTVSF*
Ga0117932_1092879	Ga0117932_10928791	F084026	AKPVAVDVDRTGQHRLVVYAVPRDPALVGSGELRDRLRLEFERAIKERLNPLLAHVHDVVLVAELPQVGPGKTKTMSELRKDYLARIGQA*
Ga0117932_1100441	Ga0117932_11004413	F102445	MDRRQLLFTTLMGSLAFAMRNVGLYVLIHPPFMFEPRWIFSLLAACWVVPEGGLIAGALAALKLEKLVQADLAAIPAHFFVGLFAKLLIQRKTNSLYACFLRTLLGVLLYGLTTLLFTPAMATITLVPVLTFISVTSSTCLCSRTGC*
Ga0117932_1108565	Ga0117932_11085652	F001564	PSLRFLIHWALRRDELCDPGLCPDAPDDGGRCGHCPLDKLDAAQSSETGLLIRRAIDLGAALKLGVCISLDEIRGDEFLAMLTIEAEKDRIDAADATAIRHTAGLST*
Ga0117932_1111181	Ga0117932_11111814	F001564	LIHWALRRDELCDPGLCPDAPDDGGRCGHCPLDRLDAAQSSEAGLLLRRALDLRAALKLGFRISLDEIRADEFRALMVLEEEQERFDRERLNASRS*
Ga0117932_1120643	Ga0117932_11206432	F073072	MQQRSEPKMTKTKKIVFIYAQLVEEPEAYGGKTNADIEKEILKDIGLIPYVARIEKVTVLDCPP*
Ga0117932_1122922	Ga0117932_11229221	F008219	MPKYLVEIILVVKAKNPQEARKIADYIIDLPIPDKNIENAIETMRYEEIVQIKNPRA*
Ga0117932_1124535	Ga0117932_11245351	F063102	FGTDSVAEQIEFGFAGDVSTAPPMAHRLAGTGIGTPECFVESREGEACE*
Ga0117932_1125950	Ga0117932_11259502	F050736	MPAPVISHIILMGALIVVIFTVQVFYFYVVDNVWAEMVRRELKELTDYVADTIANLYFLANSTSTNPLLEKTLRLPLDIGGSSFSIEITKDQNNYTQTVKATVQGKSWLYVSSWLPRGLLVDTGKTKTIESSGKTVVAGCQRVSSRIYVWIAYKG*
Ga0117932_1153429	Ga0117932_11534291	F038503	KTKMKKSVKVWLVGWALFWLSFIVTFFVDYLGVVEVSNLGFVEAIWISWILWTVGLGLTLAILTRFIVKE*
Ga0117932_1154196	Ga0117932_11541962	F064893	MSRIIRYEFMGSWFRFWLMCLTVIGIPFAVLYLIDGTLRIEHEIDDPERFVEEFRSGRLTKKR*
Ga0117932_1160102	Ga0117932_11601022	F069685	KARITELEAENEKLKATVTEATKTLTAYVERERESAIKSILEKTTLAKDELEKLDLSQLRLVQKGIDSVKGSVKNVRSAGASTTEDNKLTVGCLYHKKEK*
Ga0117932_1161243	Ga0117932_11612431	F006925	LAVQVEVLEGFGRDIALRKKWMQMWETLGERILKMPKWMQDIVLEDIYNAVRNRVAVMEMVQK
Ga0117932_1162400	Ga0117932_11624001	F051554	MQLRYYVPFKAQEDVKAEYALKEKLLNIEGVAIDTSVNANKWQIPSEDLGFLAESLIGVQLRVDHAESALMVVGKVAEAKREGDKVLFRAEVGEEKLIEKILSGYVTHVSVQVDSEEVECSKCKRPTRREGMLVHLCPGAWEIVHKPTARELSIVASPAYKTTEFTPVGFYAAMNNGQWDAAVKTVTRSESLLDKSDNVGSKPVERLQEPENKNLNKQNEVKPMSVKADEKASPQQAQAVVNV
Ga0117932_1166009	Ga0117932_11660092	F051554	VSAEYALKEKLVNIEGVAVDTSVNANKWQIPAEDLDFLVNSLVGAQLRVDHAESALMVIGKVAEAKRDGDRVLFRAEVGEEKLIEKVLRGYVTHVSVQVDSDDVECSRCKRPTRKEGMLVHLCPGAWEIVHKPTVRELSIVASPAYKTTEFQPVGFFAAMNISQWDAIVKSVTDSQSLPQKSDDVGSKPERLQEPETKIGQDKISEVKPQMSVKADEKASPHQAQGVVNVAPGETSTATA
Ga0117932_1168642	Ga0117932_11686422	F001564	LTPGEWPARPSLRFLIHGALRRDELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRIGLDEIRAEEFLALVVLEEEQERLDRERLNASRP*
Ga0117932_1175078	Ga0117932_11750781	F001564	RLRGVRRPKLTCGEWPEDPSLRFLVHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRSLDLRAVLKMGVPIGLDDIRADEMRALIMLEEEQERLDREKLNGSST*
Ga0117932_1176436	Ga0117932_11764362	F003098	MKLSSLQREGTMAKSIEFVFQFPPIQGVFDTGCGVVYMFGTLHENEIEDIIVHETLHYVLQKVAGKRTSLKLDRIYDKIPSD*
Ga0117932_1178407	Ga0117932_11784072	F069685	MSEEKPTEDVEALKARIVELEAENEKLKTTMAEATKTLTAYVEREREAAIKAIMEKTTISKDDLEKLDLVQLRLVQKGIDNVKGTVKNVRSAGAGDSEENRLTVGCLYHKKEQ*
Ga0117932_1183853	Ga0117932_11838532	F001564	LCDPGLCPDAPEGGRCDHCPLDRLDAAQNSEVGQLLRRALDLRAALKLGVKLSLDEIAADEFQAMLIIEEEQTRFDEERAKRHGSEPAGKWRLSS*
Ga0117932_1202386	Ga0117932_12023861	F020112	MVSKAFKKCVELVEEILREGYRLHIPSTHVEKQIKVHVGADKRTIQTYMKMLTEDLGFLETSAKNPLGIIIYRIDIPTIEQYVSEHMKEKLRQLTLLDVRLREEEVKPEKV*
Ga0117932_1216684	Ga0117932_12166842	F089535	VVGKGKSVPRDGPEGEWSKVYYQLEAVPAESEDVQAVRMSLEGILDQWLSVEAKPEVEVPKLDLAELDQLPWTAYKTKEPAKEGEAGWIFANTEGAEELVKAMQKCEGKLELGAYVYRFSGKEKQFIARKPVKK*
Ga0117932_1218008	Ga0117932_12180081	F094604	LTTERITELLNVIESRQSHYAELRAIAGGALPSIWSDWQHYEPAGSIASDIVAVLEASLIGRVDLRVDPDDATADQLITLLYQRHLHPLVREAVRDYIICGWGGVTMTPWGQARLKPEHSLAGKDWYLRRYELDVRAARQRFGKRRVFDNKSGDVLLVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009945: Combined Assembly of Gp0139326, Gp0139349, Gp0139350, Gp0139351

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences