NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011316

3300011316: Marine microbial communities from the Southern Atlantic ocean - KN S19 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300011316 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114292 | Gp0125916 | Ga0138399
Sample NameMarine microbial communities from the Southern Atlantic ocean - KN S19 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size95664870
Sequencing Scaffolds38
Novel Protein Genes39
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available28
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Albuginales → Albuginaceae → Albugo → Albugo candida1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic Ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001679Metagenome / Metatranscriptome653Y
F006551Metagenome / Metatranscriptome370Y
F020371Metagenome / Metatranscriptome224Y
F021393Metagenome / Metatranscriptome219N
F026894Metagenome / Metatranscriptome196N
F031929Metagenome / Metatranscriptome181Y
F040684Metagenome / Metatranscriptome161N
F041257Metagenome / Metatranscriptome160N
F042932Metagenome / Metatranscriptome157N
F045802Metagenome / Metatranscriptome152Y
F050311Metagenome / Metatranscriptome145Y
F052640Metagenome / Metatranscriptome142N
F052659Metagenome / Metatranscriptome142N
F058220Metagenome / Metatranscriptome135N
F060053Metagenome / Metatranscriptome133N
F060086Metagenome / Metatranscriptome133Y
F062832Metagenome / Metatranscriptome130N
F065861Metagenome / Metatranscriptome127Y
F072260Metatranscriptome121Y
F074005Metagenome / Metatranscriptome120N
F088935Metagenome / Metatranscriptome109N
F092209Metagenome / Metatranscriptome107Y
F093997Metagenome / Metatranscriptome106N
F099485Metagenome / Metatranscriptome103Y
F105006Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138399_1009522Not Available646Open in IMG/M
Ga0138399_1013047All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium667Open in IMG/M
Ga0138399_1014525Not Available577Open in IMG/M
Ga0138399_1016747Not Available749Open in IMG/M
Ga0138399_1021317Not Available621Open in IMG/M
Ga0138399_1022635All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis927Open in IMG/M
Ga0138399_1032018Not Available510Open in IMG/M
Ga0138399_1040540Not Available526Open in IMG/M
Ga0138399_1041425Not Available830Open in IMG/M
Ga0138399_1042074Not Available552Open in IMG/M
Ga0138399_1042768Not Available625Open in IMG/M
Ga0138399_1044983All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium654Open in IMG/M
Ga0138399_1045884Not Available827Open in IMG/M
Ga0138399_1055530Not Available584Open in IMG/M
Ga0138399_1061329Not Available1689Open in IMG/M
Ga0138399_1064475Not Available791Open in IMG/M
Ga0138399_1067003Not Available723Open in IMG/M
Ga0138399_1070639Not Available516Open in IMG/M
Ga0138399_1080593Not Available1003Open in IMG/M
Ga0138399_1081304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium737Open in IMG/M
Ga0138399_1082907All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium537Open in IMG/M
Ga0138399_1099424Not Available643Open in IMG/M
Ga0138399_1099587Not Available508Open in IMG/M
Ga0138399_1104545Not Available501Open in IMG/M
Ga0138399_1118385Not Available599Open in IMG/M
Ga0138399_1121620Not Available539Open in IMG/M
Ga0138399_1123626Not Available526Open in IMG/M
Ga0138399_1123677All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Albuginales → Albuginaceae → Albugo → Albugo candida922Open in IMG/M
Ga0138399_1131804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium520Open in IMG/M
Ga0138399_1141193All Organisms → Viruses → Predicted Viral1252Open in IMG/M
Ga0138399_1143998Not Available643Open in IMG/M
Ga0138399_1149709Not Available531Open in IMG/M
Ga0138399_1158690All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria544Open in IMG/M
Ga0138399_1163209Not Available670Open in IMG/M
Ga0138399_1167357Not Available868Open in IMG/M
Ga0138399_1171593Not Available1781Open in IMG/M
Ga0138399_1174942All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium520Open in IMG/M
Ga0138399_1176205Not Available572Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138399_1009522Ga0138399_10095221F031929YDVSAFGINSTVGLSVNSSDAQLIDVSTDGNASGISYESSFEYDLAAEDENGESSPSYWLRGVVTPDFAKGAYGIIGYNSDEEVTYGIGYNASDNFKVATELSGDGDTVIRFSYSF*
Ga0138399_1012189Ga0138399_10121891F099485KTQVARTPVKAVSKPLRQSQTITNEDLMGLSWIMFEESD*
Ga0138399_1013047Ga0138399_10130472F050311MKALRTKICTYAIALLASIGFATPTLAGSSDFAGIFIAGHAELNVVAIDGSSRTGAGNDGSSGANGGRSDNIEVTQGTIGGFAPTAGWEIGFNLPLGDTFFVTVGFADGGGESAAIAKVDDGAPTSGTDVSLHASNPSWWYIAPAISIFDNSAVYFKWGQAHA
Ga0138399_1014525Ga0138399_10145251F042932DTLADVVQSIAESQQRVEKAVSEIVDRVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAYEEPEEVERTEPEMVQKSEHSFSTETPRPNAAPETLDKSFSKDFSPILKDAREQGYEGLSVVAQNILSGKYYKPTPEEIGGF*
Ga0138399_1016747Ga0138399_10167471F093997AGLDDDRSGEDKPASDKGGLKMQKKSDDDTELIEKAEHSFNTETPRPNASIENVDKSIKDSSLILKDARAEGYEGLSQVARNILNGKYYVPSDDEVRGF*
Ga0138399_1021317Ga0138399_10213171F092209MNKIKYLGTLIGITTVLVIFGMATTHVMADSPTDADGESQESGESGHHEYIGESGEIEKCEGMVYESAEDAKAAAIENGCSGYHEFDKDGTVWYMPDC*
Ga0138399_1022635Ga0138399_10226352F001679VWGMSWCQEAMKGVEGCEKPGEAVKRALIPGSLNYRTLNT*
Ga0138399_1032018Ga0138399_10320181F006551TDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL
Ga0138399_1040540Ga0138399_10405401F006551VLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRTPGYPFVNHAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0138399_1041425Ga0138399_10414252F074005MVQIRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPWDKSGWRG
Ga0138399_1042074Ga0138399_10420741F072260GIDAKFFSPSQKKSLSNYFERCMKKYPGIVVQKEIEDFGSSRKCPELRMYYVGNEYQYSVCDNEFAGVIRPRQEGGTFDTPLDSLKSRTKKILRKLPPMVMPNGKRLPRLLTRLDMGYIVDGKYSPFVNEVEFQCSLYSEDCAHHPDRLIDAALGHQMVKIAKLYVK*
Ga0138399_1042768Ga0138399_10427681F006551STTGYYDPWAANATIDRDSGTAFDSTVESASGTIGTNGVLTDDTLRSFLRKIRIAAGKDPNVWLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIK
Ga0138399_1044983Ga0138399_10449832F050311MKALRTKICTYAIALLASIGFATATLAGSSDFSGIWIAAHAELNVVAIPGTHTAGAAGADADGGTENVETTEGTIGGFAPTAGYEIGFNLPLGDTFFITVGYADGGGKSAAIAKVDDANGISDVSLHASNPSWWYIAPAISIFDNSAVYFKLGQAHADLTAIGDLTGSPGNIEGDMWGI
Ga0138399_1045884Ga0138399_10458841F060086SNLSLSSGRLGEVVRGSIFGYDHETPLLDDLADLL*
Ga0138399_1055530Ga0138399_10555301F093997DVGAKVTVPRDPYPQGVQAGLDDDRSGEDKPASDKGGLKMQKKSDGDTELIEKAEHTFSTETPRPNASIETVDKSIKDSSLILKDARAEGFEGLSTVARNILNGKYYVPSDDEVRGF*
Ga0138399_1061329Ga0138399_10613295F058220MQIFVDCDDTLILYDSHTGIHPYGVRHGEPWHPNHPLVDALIETEHSVFVWSGGGAWYAEIIAGKLGLDFPCLDKDETTFEVIQEEDVVIDDQDLGGRRTHNPFEWPETKGRLTPNQL*
Ga0138399_1064475Ga0138399_10644751F020371QDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSTFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVTLADASLTAKAAIGVWDTFVASADRSTNNPLLDLGIVQLLIEGSGVGGKLSRIGMHPLDFAKYTGNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASIIQSETGRQITGISTP
Ga0138399_1067003Ga0138399_10670032F052640MVQIRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYA
Ga0138399_1070639Ga0138399_10706391F060053AFGLIPAGTITRETIISTRRIPIAGTTTITKGNVCELSGGYLANSPTGVTADVNHFVALETIDNSGGSAGALSAPVAVSGHYVTVVADGAIRPGARVQVSASTAGQVITAAGDIDQQIGWYTGKEGGTIAKDSSTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
Ga0138399_1080593Ga0138399_10805932F062832LKDDDEKDKAFQTSIKTGLDGLSEQLTKFAEHLKGIDSRIKALETPTDLPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRQNDNAPAGDSAPSMQEKPLHKNETPRLVSKSQHTFTTETPRPGAAIEKAGQSQTDFSPILKDARAEGYEGLSQVARNILKGKYYTPTDEEVRGF
Ga0138399_1081304Ga0138399_10813041F045802MKDLKCSVHGTELVEKEVPVFYGMPTPDSDIFEIGSRFPRHSLWSLGGCEVSDDSPENGTGLVCADCHDAAKKM*
Ga0138399_1082907Ga0138399_10829071F050311IMKALRTKICTYAIALLASIGFVTPTLAGSSDFSGIWIAAHAELNVVAIDGTHTNAGTTAAHASGGSENKEVVQGVIGGFAPTAGYEIGFNLPLGDTFFVTVGFADGGGEAAAIAKVRDQNGTADVSLHASNPSWWYIAPSISVFDISAVYFKIGQAHADLKAIGDVTGSPGNIEGKM
Ga0138399_1099424Ga0138399_10994241F065861FIFDLSISMLLFVFRRDIIGRNNNSAAIPTLEEGLLHKNRLVLNCLT*
Ga0138399_1099587Ga0138399_10995871F006551AFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
Ga0138399_1104545Ga0138399_11045451F006551TDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDTNDSAEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRD
Ga0138399_1118385Ga0138399_11183851F105006MNRFTLLNSNGVARPGFYIEIIQFPSGSTPGQAVYVDGRGTEDRINFIYNPSTDLLDAWHIKSPENKFSMSPITVSNRVVGLDVRFAHIPNFVAHFALDLSTEEEDVVYDVLAPPVHLVELSSVSF*
Ga0138399_1121620Ga0138399_11216201F040684HKEGKTMKRVIYLIILAMSLTLVFSQGKPCCKNKSYKGKVACKFNRANIDLNKDGTMADGTQIAAAGIQCPLSVQNTSINKKNCTNCAKSTWWKFWGKKKGCCNTNS*
Ga0138399_1123626Ga0138399_11236261F062832KTTRKAEDDKEEEKSKAFETSIKTGLDGLSEQLKAVADSIKGIDSRVKALETPTDLPAAPKGTQGGDDVGADITVPAQPYPQGDQAGLDDDRVDDNKPENDATPSMQEKPLNKTEKLVTKSQHTFSTSTPRPQAAIEKIGESQTDFSPILKDARAEGYEGLSQVARNILKGKYY
Ga0138399_1123677Ga0138399_11236771F060086FELDSNLLLSSGRHGEDCKRQCIYLYDHETPLLDDLAD*
Ga0138399_1131804Ga0138399_11318041F050311VLITSRERKNIMKALRTKICTYAIALLASVGFATSTLAGSSDFSGIFIAGHAELNVVAIQGSHTAGGGGADASGGTENVEVTEGTIGGFAPTAGYEIGFNLPLGDTFFVTVGFADGGGKSAAIAKVDDANGITDVSLHASNPSWWYVAPAISIFDNSAVYFKWGQAHADLTAI
Ga0138399_1141193Ga0138399_11411933F026894SPVASVSRTKSGNSNRVKLTQDDLDTAKSFGIDINDETALKRFAREVKNLSDTGQQ*
Ga0138399_1143998Ga0138399_11439981F041257TIGIWIKKEFEPNYRPSVSEEDDVVDPWSEQPDGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNPFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDVPPSPPRTQ*
Ga0138399_1149709Ga0138399_11497091F060053WIGALVDMAFGLIPAGTITRETIISTRRIPIAGTTTITKGNVCELVGGYLANSPTTATVDVNHFVALETIDNSGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAATTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
Ga0138399_1158690Ga0138399_11586901F052659FMLLSGNPGTETRSAVFIDGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
Ga0138399_1163209Ga0138399_11632091F031929FYGDDNYWAARASYDVSAFGINSTIGLSVNSNDAQLIDVSKSGAVSGISFESSFEYDLANDGAYWLRGVVTPDIAKGAYGIIGYNSDEEVVYGIGYNASDNFKVATELSGDGDTVIRFSYSF*
Ga0138399_1167357Ga0138399_11673571F088935MTSIGGLDVAFGARMQVVRTNVLCLALAGTGLVNATTVPKYILNTYKEGLKGTVIEPDFLYIYEISEINVSSGFTTAAVMDGLFNQDNDGDGTADTTALEVNGVLRDIRQTPLAVNSAFADTTASHADFSVATPLHTYDNIQGNLA
Ga0138399_1171593Ga0138399_11715931F021393QRVDTEKAFQDTVKSSLETLTEVIQSVAETQKGVSDSIDTFDERLKALETPSDLPLAPRGTAGGDDVGAKVTVPRDPYPQGTQAGLDDDRSGGDKPVSDKGGLKMQKKSDDTEIVEKSEHNFTTETPRPNASPETVEKSYQTDFSPILKDAREAGHEGLSKVAQNILSGKYYKPSDDEVRGF*
Ga0138399_1174942Ga0138399_11749421F050311IISVLITSRERKNIMKALRTKICTYAIALLASVGFATSTLAGSSDFSGIFIAGHAELNVVAISGTHTANEAGDASTTTKDARKTAGTAGGWAPTAGYEIGFNLPLGDTFFVTLGYADGGGESAQIVSANDEADNADVTIHASNPSWYYIAPSISIFDNSAVYVKIGQASADL
Ga0138399_1176205Ga0138399_11762051F105006MNKFTLLNSNGVARPGFYIEITEFPQGNQPGKAIYVDGRAEDDTINFKYNPVTELLDAWHIGSPDSKFTMRPITVSGRVVGLDVQFSHIPNFTAHFALDLSTESEDIVYDILAPPVHLAEMSKCAF*

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