NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011972

3300011972: Human oral microbial communities from Los Angeles, CA, USA - S04-06-R



Overview

Basic Information
IMG/M Taxon OID3300011972 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134618 | Ga0119788
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S04-06-R
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size151635846
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F036281Metagenome170N
F040685Metagenome161N
F051212Metagenome144N
F059076Metagenome134N
F061926Metagenome131N
F061927Metagenome131N
F090516Metagenome108N
F097490Metagenome104N
F101359Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119788_1000236All Organisms → cellular organisms → Bacteria43724Open in IMG/M
Ga0119788_1002615All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae8373Open in IMG/M
Ga0119788_1005827All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae4062Open in IMG/M
Ga0119788_1006078All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium3910Open in IMG/M
Ga0119788_1009229All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2563Open in IMG/M
Ga0119788_1010436All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2248Open in IMG/M
Ga0119788_1010750All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2186Open in IMG/M
Ga0119788_1017791All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1328Open in IMG/M
Ga0119788_1032075Not Available763Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119788_1000236Ga0119788_100023625F036281MITLIKVDEGPVDIYELRMQYLTKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYFDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTLRMSDDQKSKFTRIAMTNEKGHQTYDWILENVEWAADTIRYF*
Ga0119788_1002615Ga0119788_10026159F090516MKSNLSVELFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPAEEKVTPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYEGVSEAMAEMMEYTHKIQRAEPVIEIIRQYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADIYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0119788_1005827Ga0119788_10058272F097490MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0119788_1006078Ga0119788_10060783F051212MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTNEKTIADLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0119788_1006078Ga0119788_10060785F040685MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGRALYSRLYTLNSLKKEFNTKPLMGQKEELSKEVSLPNTPKNWEVFIKKINLDKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0119788_1009229Ga0119788_10092291F061926MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVS
Ga0119788_1010436Ga0119788_10104361F101359MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYT
Ga0119788_1010750Ga0119788_10107503F061927MKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0119788_1017791Ga0119788_10177912F059076MTHKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVGSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPNSGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDA
Ga0119788_1032075Ga0119788_10320751F022002MSRRLALTLGLLLALLFSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIQEVGIHAGSNDVSYTVTGLNYARRPTFVAGLYFYKGHLRRIVFIFDDLDALEQIESELEDKYGTMIESEGTSKKKSKGIVDAFTTLEVVRRFEYEGHSMFKDAYIAYS
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