NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011981

3300011981: Human oral microbial communities from Los Angeles, CA, USA - S01-02-D



Overview

Basic Information
IMG/M Taxon OID3300011981 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0113963 | Gp0134608 | Ga0119778
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S01-02-D
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size191617173
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2751
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F030786Metagenome184N
F033081Metagenome178Y
F040685Metagenome161N
F043991Metagenome155N
F046431Metagenome151Y
F070224Metagenome123N
F092231Metagenome107Y
F095630Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119778_1000190All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44283Open in IMG/M
Ga0119778_1000811All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes20229Open in IMG/M
Ga0119778_1001073All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae17297Open in IMG/M
Ga0119778_1002122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium10951Open in IMG/M
Ga0119778_1006811All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis4269Open in IMG/M
Ga0119778_1007115All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis4127Open in IMG/M
Ga0119778_1018610All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2751768Open in IMG/M
Ga0119778_1030175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1151Open in IMG/M
Ga0119778_1034260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1028Open in IMG/M
Ga0119778_1054762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia672Open in IMG/M
Ga0119778_1059680All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium623Open in IMG/M
Ga0119778_1065508All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium573Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119778_1000190Ga0119778_100019041F018385MAEHVNRWDPYNEISLEDRDPVFDDPIIYGTHVKTVTLTVYSPDGRVQKYWNARILKDLLGYVRIACPRDGKILKFNWMDWTAYFFTSHGLSELVMMPDSSRKTVTQLHKEVN*
Ga0119778_1000190Ga0119778_100019046F043991MSKKNPSAVDGFDLNGNVIEEAKEFDGVLLEDWVNQRSPLKPSWVGRYSDQMHFDLQDGTEVSFYKHPNVIYADILFSGGGIRTILFKCRQKKNLTRFISRVLKLATMGPSSVHPDLRVDN*
Ga0119778_1000811Ga0119778_10008114F046431MFTYTQILVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVFQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVSIAEYNTPYVNVTYLDGTSEDIPKSALLKVWMEGRNSK*
Ga0119778_1001073Ga0119778_100107324F070224YNAPDSIYVATGAVYIPPISGEPIYLFASPLRPAKTRGSKLRARDWVKVDYSYQNNIIIMGFGDSLVIENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHNKKADRYYKYRIALVIYMDYNHPEACIIH*
Ga0119778_1002122Ga0119778_100212217F046431MLSIIITYGSGIIVKAAESDLTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGATQFETIGLTDFSNNATDEEVKVLNIYPDVASIPRVQVTYLDGQTETIPKSALLKAWMEGRNSNRRKYSNKF*
Ga0119778_1006811Ga0119778_10068115F095630MVYSSLYKTVENNGLLAHIYEHLLAQYVVKSLQGRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYGEALRMFDEWDIPGDAALRVAGECEIEMNRAVVELQQDELLHNLNTVQSSAWCRQSDLTYRKADDKSSVNTLFRVPYVKYGRKSKNIFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASRSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCDNLQTALVRCSHNYEQVLLGRDTLNSILGGCVIGGKGWLEMADSARIQQMLAAIELDVYGI*
Ga0119778_1007115Ga0119778_10071151F033081MYPPDLMVVHRPRKGIMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATGCGVYDTLLLFALMEEQAFRSGGEKWSWRERVRASVCFGLAHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYHSQIVATAAATTIHALYNVIALSLIAVVAVIYMAISICS*
Ga0119778_1018610Ga0119778_10186102F070224MRRLFFLLLTLLHCTAWSQVYNAPDSIYIIRSGIYIPPVSGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAESPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0119778_1030175Ga0119778_10301753F046431QNLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGTTHFETIGLTDFSNNATDEEVKVLNIYPQEGITDGRLYPRETPEVVSNIFRSIPKVEVTYLDGTRETIQKSALLKVWMEGRNSKRR*
Ga0119778_1034260Ga0119778_10342602F046431IIMLTYTQILVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSSNFETIGLTDFSPEAIDEEVKVLNVYPHSKNVGRLWPGSTAFQSLPMVNVTYLDGRTETIEKSALLKVWMEGRNIK*
Ga0119778_1054762Ga0119778_10547622F092231LIQFPWPIQLNGFPAYAEQLGWKPTSRPTWFNVVPEKNDEITILSSSEAGDVYKLFLHMAANDADDVEGAAELNDHFVSCVAAGREAWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFRFFTPEGRWYFL*
Ga0119778_1059680Ga0119778_10596801F030786RTKIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGAIKVKYFDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0119778_1065508Ga0119778_10655081F040685FKLFFALAFVSISLHGQEKIQQVEVHIFGGRALYSSRYTLNSLKKEFNTKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKELKDGPSEQAADGQDKVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKSIYE*
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