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Sample 3300013066
3300013066: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 37_C Kraft BY (Metagenome Metatranscriptome)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300013066 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191764 | Ga0164281 |
| Sample Name | Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 37_C Kraft BY (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 56230635 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | USA: Emeryville, California |
| Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F000135 | Metagenome / Metatranscriptome | 1961 | Y |
| F017885 | Metagenome / Metatranscriptome | 238 | Y |
| F034415 | Metagenome / Metatranscriptome | 175 | Y |
| F045895 | Metagenome / Metatranscriptome | 152 | Y |
| F046477 | Metagenome / Metatranscriptome | 151 | Y |
| F104871 | Metagenome / Metatranscriptome | 100 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0164281_102222 | Ga0164281_1022222 | F045895 | ADMFRAVMEEAAALASLAMFLGMIAVWAQVIAAL* |
| Ga0164281_109739 | Ga0164281_1097392 | F017885 | MSSTDMNEICFQCPSCGHDLKQSIGRLKQSQHMTCPGCGIGINIDTNRLAQVSEEIQKAIDKVPPEITIKFYRPIEQD* |
| Ga0164281_154884 | Ga0164281_1548843 | F000135 | FQLRSPECAEEFERLMAEDRDIVHGSLETVAEWRLTAPADVPGQSIGEADYVLIAEIVELDRFQEQASERVQQLADDLQHLVAHRGMLVVRHIL* |
| Ga0164281_159986 | Ga0164281_1599864 | F034415 | MSAAATHTGHKRLQHLVEHEAYRRIMAGEAPETLSEFARELQGWLQRNYPDAAPTTPDAIENQIRETWHRRHELIRGG* |
| Ga0164281_179808 | Ga0164281_1798082 | F104871 | MPDREAHLRTLAERLMFSVEQTGDRFTLTRTADVSRPVREAGLTIDQAEELLETWKLRGPHGG* |
| Ga0164281_182021 | Ga0164281_1820212 | F046477 | VAGRPHALAQRIAAFLRKRNAGYCETCLIARLLVASRAAMRAALEMDCFSVRVGVCPDCKTRKQVITCKAGSNVAA* |
