NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013134

3300013134: Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S3



Overview

Basic Information
IMG/M Taxon OID3300013134 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118446 | Gp0134503 | Ga0116697
Sample NameBeach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S3
Sequencing StatusPermanent Draft
Sequencing CenterGeorgia Institute of Technology
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size315651363
Sequencing Scaffolds28
Novel Protein Genes32
Associated Families30

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales1
All Organisms → Viruses → Predicted Viral3
Not Available12
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBeach Sand Microbial Communities From Municipal Pensacola Beach, Florida
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → beach → beach sand
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Municipal Pensacola Beach, FL
CoordinatesLat. (o)30.3262Long. (o)-87.1745Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004520Metagenome / Metatranscriptome434Y
F006007Metagenome / Metatranscriptome384Y
F006866Metagenome / Metatranscriptome363N
F008384Metagenome334Y
F010610Metagenome / Metatranscriptome301Y
F010827Metagenome / Metatranscriptome298Y
F010877Metagenome / Metatranscriptome298Y
F011096Metagenome / Metatranscriptome295Y
F013231Metagenome / Metatranscriptome273Y
F013838Metagenome / Metatranscriptome268Y
F014622Metagenome / Metatranscriptome261N
F015742Metagenome / Metatranscriptome252Y
F016593Metagenome / Metatranscriptome246Y
F024348Metagenome / Metatranscriptome206Y
F024891Metagenome / Metatranscriptome204Y
F028441Metagenome / Metatranscriptome191Y
F032078Metagenome181Y
F035085Metagenome173Y
F042645Metagenome / Metatranscriptome158Y
F042907Metagenome / Metatranscriptome157Y
F058634Metagenome / Metatranscriptome134Y
F070127Metagenome / Metatranscriptome123Y
F070744Metagenome / Metatranscriptome122Y
F072365Metagenome121Y
F079928Metagenome / Metatranscriptome115N
F090866Metagenome / Metatranscriptome108Y
F092086Metagenome107Y
F096243Metagenome / Metatranscriptome105N
F102074Metagenome102N
F105152Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116697_1002023All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2900Open in IMG/M
Ga0116697_1007834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales1598Open in IMG/M
Ga0116697_1008176All Organisms → Viruses → Predicted Viral1569Open in IMG/M
Ga0116697_1009056All Organisms → Viruses → Predicted Viral1498Open in IMG/M
Ga0116697_1014920Not Available1198Open in IMG/M
Ga0116697_1021761All Organisms → Viruses → Predicted Viral1022Open in IMG/M
Ga0116697_1022182Not Available1013Open in IMG/M
Ga0116697_1028763All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon911Open in IMG/M
Ga0116697_1029111All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium907Open in IMG/M
Ga0116697_1037226All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium822Open in IMG/M
Ga0116697_1039815All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria801Open in IMG/M
Ga0116697_1040214All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium798Open in IMG/M
Ga0116697_1051085All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium730Open in IMG/M
Ga0116697_1059182All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis694Open in IMG/M
Ga0116697_1060247All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae689Open in IMG/M
Ga0116697_1063314Not Available677Open in IMG/M
Ga0116697_1064871Not Available671Open in IMG/M
Ga0116697_1070254Not Available653Open in IMG/M
Ga0116697_1078343Not Available630Open in IMG/M
Ga0116697_1091765All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon597Open in IMG/M
Ga0116697_1098123Not Available584Open in IMG/M
Ga0116697_1098977Not Available582Open in IMG/M
Ga0116697_1112446Not Available558Open in IMG/M
Ga0116697_1116699All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium551Open in IMG/M
Ga0116697_1128054Not Available534Open in IMG/M
Ga0116697_1137099Not Available521Open in IMG/M
Ga0116697_1143327All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium513Open in IMG/M
Ga0116697_1153490Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116697_1002023Ga0116697_10020233F070744VTVPSNTDDDQLQQICNEIPASDWVRVKNAWRQHQHNDTPRYMRYIHATNEENKRLELFWQRLVAQDFITEEDALLLTENFFQELGGYSDEKAKDMRRKILSRAADRFR
Ga0116697_1007834Ga0116697_10078342F070744LSIDECNNARLRKQLGAIMSKRLIPSKRGWLRRYLQDQLKVIVPSNTDDDELQQICDEIPAKDWVQVKNAWRQHRHNDTPRYMRYVHATNEENKRLGLFWQRLVAQDFITKEDALLLAENFFQGLGGYSDEMAKAMVRKILRGTADRYRNKTTTTPRNLKTDEVVQDT*
Ga0116697_1008176Ga0116697_10081763F015742MDSKKAYELEKEEIVDRESAYLCTEIERALDRIIEWTDPLDDTMFRDIKAPAIKLLKEWHL*
Ga0116697_1009056Ga0116697_10090563F105152MNREYCRVDDDPSYDYSDYVEQRGYYEPYKEAEEPDYDPIDEEEMRERIKEVKTRLGVKQDD*
Ga0116697_1014920Ga0116697_10149202F072365MSEVGSMSENLKECQDCGWRGMAAELDETDDGSSSQTHIFCPECGGLDIKDLNPDEKEAAPEP*
Ga0116697_1021761Ga0116697_10217613F013231MEKNYQTCKYIRNRVDLYLYEMSSLFTNIGTDSTEEEVQEAYKREAEYIELIAELDPVKADRLRASY*
Ga0116697_1021761Ga0116697_10217614F024348MSFDTYYEDLTPDEADFILDIYQVVDRMVYNGLPVTLVGLGYELGVKPQELSDYLPTIIQILNKVEQEY
Ga0116697_1022182Ga0116697_10221821F090866GMTRPQTGRLKFAEGGLITSPVNESVDYLKAIAEATTSTAIGVSKPVRAYVSDKDLRGNATERRIRDRNDRL*
Ga0116697_1028763Ga0116697_10287634F079928VRAKLKENEGKYSSSVREVIAKLENKYFIGDLTVDELRRVHLFSDTSYVEQSAVSLMWGDEIFDNYEGNN*
Ga0116697_1029111Ga0116697_10291111F070127MQKVNFSITINLSLDLKENRAKINIENVDLVPAVVSLPVSNSRYRADPSRTKKKTVHDIILQTAKKYVLESGQNKFTGAKLFNLALVRHHGLKRNTFAARVIAAAPNHPSHRHSSNRKDYFSYLGKGFYKLNQKYLGVPAEQILPPSDQVREHVKRKYID
Ga0116697_1037226Ga0116697_10372262F070127MNKVNFSITINLSLDLKEDRANINIENVDLVPAVVSLPILDSWYRADLSKTKKKTIHDIILQTAKKYVLESGQNKFTGAKLFNLSLVRHPGLKRNTFAARVIAAAPNHPSHRHSSNRKDYFTYLGKGFYKLKQKYLGIPADQIMPPSDQVRDYVKRKYIDPAQKAGK
Ga0116697_1039815Ga0116697_10398151F058634MSSAMLTLAAFAVTLAGCTSDQGEPPGIGSVDMEVTLATPPAGPNEQIDTVNVSFWCEGVDPVLGVPRPPQSNPETFTINTSTSQGPEPYNTIGLFEKQGIPAGECHFFYTATSNTGNTECTGEASPITVVTDQTTSFEVVLACIHTPRYGGVRSDGSFNQCAEYRQILVSPTTQAIGNLVDVWTEVYDPDGDDVTVGVQAVGACS
Ga0116697_1040214Ga0116697_10402141F028441MTLKQLIKLEDKANEVWVVSPTLHYDTENKDFSELVSVNLGEKTKYRYIVPSTPTVHKHLKAYKKMYNMTDGEMIKNFCILPSSEFTPFIQEIAIYNASTDCVACAGSSTEDTNDVIKFAQDHAKEMALAFKRIWRKYKLCNP*
Ga0116697_1051085Ga0116697_10510851F102074MRKLATLTKMTAKGLSTWTFAQCDGVYIAFGGTTNRCRVFRSYAQLQDCLVNYASYGYDLERHTAKRRWDGATPKPVKRSSSIQQELPLDEDTSAPRPVEDTAVALY*
Ga0116697_1059182Ga0116697_10591821F006007YGANSVQHNEPKKIKAFNKFDKTGTEALLYVANPYSGNPYYGVPNYISAFHYIASDFSFGKHIKNSAENGFTPKVLATFIGRNMSAEQKREEYNKFKESFTGAEADNFIVSWVKKEEDAPKFEPLDIANLDKTVDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDSVNRVFATVGYDAMNLSVVEEDINLESIKGANTTDIS
Ga0116697_1060247Ga0116697_10602471F006866GNTLNTMSDNGKSANVLINRNNLNNIFELLVQIHLRGQLSRDEQAFIKNFIELPEAPTRENRQARRANTQAIKKLFREEAKKRKEEK*
Ga0116697_1063314Ga0116697_10633141F004520TNEEKDEITLRVVDSLYEKLANELEYELQEHENFPETNDAYFDLFNEMTVKIVKYMRSELFQPMTNEDLK*
Ga0116697_1064871Ga0116697_10648712F032078MVILVERRGKYIVYDKQGKVVIITRDKRVAIKHARSKK*
Ga0116697_1064871Ga0116697_10648713F010827MWVLLWLQLVSGTFDHYHVGSYSSEEACNAAQKEAKVLVTNQNSKVVCIKIEW*
Ga0116697_1070254Ga0116697_10702541F096243MGLLQNITDFFASNTYVQATEHSIATNELENSIEDLNGRYKLGHTTLGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGNDISYSDEFISTNKGKAELKAFVNHCGGNNKG
Ga0116697_1070254Ga0116697_10702542F016593FTVNSFDVTLEKVVGTGSLTITNLTDLNGLDSCKDFIQINIDLLTNDIDGGEYELTITNSGSSYKYLTEVQDYTTTQSGSGIYGSTVRFTDL*
Ga0116697_1078343Ga0116697_10783432F024891MIIVEENTTAQIKMYLRDFTTESFEMEIISEDQRKEIVDSAITGTYDDFRKTFSFSYDVSALDAENFYQIKIWEVGKIKLLSQDKMYIMPSGSDVATYQPKLATTEKTMNNEFKIYGE*
Ga0116697_1080736Ga0116697_10807361F010610EQAVAFLEQGIENANTTAEQTNIFYDANAQWVAMGYNTTRNLTAVYLNGQNFGLDLYATEAEVLALGSESEYYLTGPTAQSYDCFMYETNCVEL*
Ga0116697_1091765Ga0116697_10917652F035085EFTHWDDQGRISTYFLLYVDLIGAAVDQTMKSYFGDIKNVFGSVTTTKKGLSYTKKKCPDKPFHSDCLQISLYQKALPNHIPFLTYASDYDRKLFTPDNCEELQKDNLEKYYNELVLYQRCWEKKLEFANGDPKILALLCKPDFSEIRKNGFWWKGFPKDIIQRFRGYYE*
Ga0116697_1098123Ga0116697_10981232F092086MTREQSPLMYNAAARLEETTMHKYLLSLLTVVALSACSGPEDVLENIGDVSVPDQLTGCVARADDGSCTKAVCVADEESDCKDFVKACEKHEHIVDARDGHDTCERQTASPES*
Ga0116697_1098977Ga0116697_10989771F008384ILSAQQGKITEELGKFILQRSIEIASSAFVTDGNKELQQSLIDVAVMRTCEKFLHYYEQGKSAANLVISIIYSTMTNKIVSLNHSDVYGHRIKGYLTYIEDGQSVTKLKRYVKDDYLSEKL*
Ga0116697_1112446Ga0116697_11124462F014622MIESAVYGFVAAILVLAITFMVTMLTSRFAKAGYGIMYGSLFIKMVTLSAFTLAVKPYLGDAIIYAAIVLISIMFSNVYLIIKIKQ*
Ga0116697_1116699Ga0116697_11166991F042645MPGLSEIDVYEIRQFFEESLAMAQRADKREKMRMRRKIRDEVFNLLTWEKPTPTAIMNRWEERLQDILKVMPYGFKEGLLKMLIDKMQGILKKD*
Ga0116697_1128054Ga0116697_11280541F013838PETMDAEFKDWVFDYFAKLSAEKALQLAGTELTTEMAADADVIDFDTNATLTSANILDKMEGAYEAMSDVMLAAVYGDADRDFKPTFFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPNYYGMEVAHFASMPANEFIIAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLG
Ga0116697_1137099Ga0116697_11370991F010877MTRKALILALVGGGLPKGELKAEMFKFHNSMVGKSKYFGKQENPKTACGSCIQRVKTTIWKWYHYDEKAPTYKEIVFTGRLGAHNIPLYKVV*
Ga0116697_1143327Ga0116697_11433272F011096RWFFETYDHTWEAVTKATKMYVNEYRSSNYMYMQTSQYFICKQDKHRVKHSTLADYCDMVNDGVQTEVHHFKERVV*
Ga0116697_1153490Ga0116697_11534901F042907MMTDEMLAEAEEKLFNDLRDEPCIVCGDPYMYVLGSYTPEEPSEAPKRGDKAPVLYYTLCQKCFNNGRIPTARIEAVY
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