NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013833

3300013833: Sewage treatment plant microbial communities from Vermont, USA - CLO_W



Overview

Basic Information
IMG/M Taxon OID3300013833 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116849 | Gp0137222 | Ga0119880
Sample NameSewage treatment plant microbial communities from Vermont, USA - CLO_W
Sequencing StatusPermanent Draft
Sequencing CenterNorwich University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size395172049
Sequencing Scaffolds27
Novel Protein Genes27
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Crateriforma → Crateriforma conspicua1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
Not Available4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-151

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSewage Treatment Plant Microbial Communities From Vermont, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000690Metagenome / Metatranscriptome935Y
F001844Metagenome / Metatranscriptome627Y
F004010Metagenome / Metatranscriptome457Y
F004285Metagenome / Metatranscriptome445Y
F009010Metagenome / Metatranscriptome324Y
F011492Metagenome / Metatranscriptome290Y
F012885Metagenome / Metatranscriptome276Y
F021596Metagenome / Metatranscriptome218Y
F028103Metagenome / Metatranscriptome192Y
F033377Metagenome177Y
F033941Metagenome176Y
F035652Metagenome / Metatranscriptome171Y
F050165Metagenome / Metatranscriptome145N
F059094Metagenome134Y
F064854Metagenome / Metatranscriptome128Y
F068764Metagenome / Metatranscriptome124N
F075045Metagenome / Metatranscriptome119Y
F077414Metagenome117Y
F084316Metagenome / Metatranscriptome112Y
F087603Metagenome / Metatranscriptome110Y
F092530Metagenome107N
F097376Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119880_1000016All Organisms → cellular organisms → Bacteria130554Open in IMG/M
Ga0119880_1000648All Organisms → cellular organisms → Bacteria → Proteobacteria18124Open in IMG/M
Ga0119880_1002828All Organisms → cellular organisms → Bacteria7432Open in IMG/M
Ga0119880_1004589All Organisms → cellular organisms → Bacteria → Proteobacteria5406Open in IMG/M
Ga0119880_1004639All Organisms → cellular organisms → Bacteria5356Open in IMG/M
Ga0119880_1004810All Organisms → cellular organisms → Bacteria → Proteobacteria5238Open in IMG/M
Ga0119880_1005514All Organisms → cellular organisms → Bacteria → Proteobacteria4794Open in IMG/M
Ga0119880_1005773All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium4646Open in IMG/M
Ga0119880_1006473All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria4290Open in IMG/M
Ga0119880_1008971All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3442Open in IMG/M
Ga0119880_1009801All Organisms → cellular organisms → Bacteria → Proteobacteria3244Open in IMG/M
Ga0119880_1010152All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes3165Open in IMG/M
Ga0119880_1014534All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2486Open in IMG/M
Ga0119880_1022285All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1884Open in IMG/M
Ga0119880_1029922All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1564Open in IMG/M
Ga0119880_1034517All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1430Open in IMG/M
Ga0119880_1034675All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1425Open in IMG/M
Ga0119880_1037414All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Crateriforma → Crateriforma conspicua1359Open in IMG/M
Ga0119880_1038714All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae1330Open in IMG/M
Ga0119880_1039770All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Singulisphaera → Singulisphaera acidiphila1308Open in IMG/M
Ga0119880_1050458All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1127Open in IMG/M
Ga0119880_1062514Not Available989Open in IMG/M
Ga0119880_1066949Not Available949Open in IMG/M
Ga0119880_1077265Not Available870Open in IMG/M
Ga0119880_1098037All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria753Open in IMG/M
Ga0119880_1106922Not Available716Open in IMG/M
Ga0119880_1127147All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15645Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119880_1000016Ga0119880_1000016120F064854LRFPARRATVLNMHTVSQTPLGTLLYKEFPELDLVDASEARFLTLAVRDAVRTARREGRFDGSFHHYRVRAWREQLGSRLVTVTWRVSLDGRPLVGDTEILEAPLCVSV*
Ga0119880_1000648Ga0119880_100064814F075045MWTGQVPMNGDHFNATFSGHMYEGDHFPDGTNHGTTSMMIDHHSTSTTSGRYTGSGDAGTFNMSLSPMWNRPASLGSVAGVYTRTTSNGYTMTMTVGANGQIMASDSRGCLINGTVTVPDATHNMYGMAATVTSCGSLNGHYQGMGTLLDADAMTDWMIAMHPLEHGGHSRGGSMMGGSPMMGRNTVPTGQHNLFMFSMANGQNAIMDALAR*
Ga0119880_1002828Ga0119880_10028287F004010MPLGHNVQKNIKELYADNKKSGKAKGAQGRPRSREQIIAVAYAAAKPKKKKNSY*
Ga0119880_1004589Ga0119880_10045891F012885MPYRIRWEGHGVYRRFYGVVTRQEFRDAYEEMCGDVRYEGIRYIISDYLEALPDPDLTERDLRAQARLERLRFYDSPDTVQAMIGTDPEIVEYIRYYESLRVSPHCLGYFATVADARRWIAGNPRHGWSRPPASAASGPTAP
Ga0119880_1004639Ga0119880_10046395F050165MNPTIERALGASTPALRCLAVLDAMLVPALGLYWIKTLPATGGLVGAVLGVFCLWIGARRAYRALYEFEAYRWLTLRLAKLAIATWVVMAMVKLVWFIQGSL*
Ga0119880_1004810Ga0119880_10048105F064854MYSVSQFGGGTLLYQESPALALVDAPEARFLTSAVRDAVRMARQQGQFDARFHHYRVRAWRDSLGSRLVTVSWRVTRDSQPVAGDTHILPAP*
Ga0119880_1005514Ga0119880_10055146F064854MTVSNATDGTLLYQSFPALDLIEASEARFLSSAVRDAVRTAQRQGRFEASFHQYRVRAWRESLGSRLVTVTWRVTRGPEPVAGDTHVLPAS*
Ga0119880_1005773Ga0119880_10057732F011492MFGFGKAQREPLVDIKSTERWLASFPTNDPLAIHGEVLAELGRIAAPAAKRSPQGLEAVFHLDSHCAGLRKSLTTQYIEHATRSSKIENQLWSAMFDLTQAFLVSYYAFAREVSHHAQSAKWQQLLPELLCHQIIHMGLDAKIRLYRYEQWIPAKWAELHELFSLACSRQFERAQLVPDEGGSATTIEHEYLIALLLQLMNAGNMTARHLEWVAGQLDDWCAQLRLSLEPSSVTSFYVDLGSREGLRRRTPAPLEGRVLFLDTRPLHSVLMQNVVMLEQKIRAQPLSDRTPKRSEQLGLLSKLASQVDPEFKPFARRGERTAAVGTVDAIVGFAKISGFLREEDQAPEPRLVAGKSFGNTMELAVFGRVRNETDQRVEQARRRFATFAAPGGPWEVKDVSQTGFRLLAPMSVANAVTLGTLAAIRPHGQAPWALGIVRRMKRMTADRAEIGLQVIGNSLIGVDLVEQRRSADADYSVDGEATTINGRTFHGLFLALRKRDADSAVQSLIVPAVEYQPAKRLKLMTSQAVNPVRFGRLLEQQPDWVWATVESLDLTSPLPSISTILGEKIPPAAANE*
Ga0119880_1006473Ga0119880_10064731F000690MRLASLFGPDAIAQAPRAPRLQTEAEVRVVVGLQALTRSVAEIDRLPEQARTRGVAASYDEVTQIVNPNANPESVARRIRGAMWRLTDRSETGCRLTAPAKEAPGKLGELIAIKEGQLWTLAVVRRMQRLQVDEVTVGVEIIARRLVRVLMRSWVAPPDSGRTNTERPFFGLYLPAHPENRQSSHRSLIGPEDKFGSGGMVELDTGNARYLIRFTQTLEQQAGWSWAMFNAVRKLSG*
Ga0119880_1008971Ga0119880_10089711F077414DWREAAEALEVPAAKFGRLLTVQDAVRDAARNWRVARASTV*
Ga0119880_1009801Ga0119880_10098015F004285MSLIWIANRSINVSPRVRLVADADAEALRRKREALAWRPEGGFLRDQHVERPRVATPRATPSS*
Ga0119880_1010152Ga0119880_10101522F068764LIAVLAAALYLILRGMGIIHDADFAVWVKAALLGVFLLASAINIKIGNALWAAIFAALAVGWNPWVRATGWAEPLPWDKWAMAVSVVCGLVAGAFVVRYWGRGETA*
Ga0119880_1014534Ga0119880_10145343F009010MFDPENFYLLVNHPTLIVVPIILFAATALWSQSRTAWAATVAWNLYLIYELGMKAGEFCGGDACMKRTPLYVVYPILAILSMLALVQAYVRIRDKRAREQGLAPADISAPTRP*
Ga0119880_1022285Ga0119880_10222855F059094METIAEALRLLKRQACIQNDVRRARGSRVVEERELFLIRNRLAQFPAAVQAITLTAAELHRPVDTLSVGDVEKRC*
Ga0119880_1029922Ga0119880_10299221F097376MKKAVSPKKNKTAADVVPQEKKQTKTGPVELDLADLKKVSGGLPNGTWNRVK*
Ga0119880_1034517Ga0119880_10345171F028103MPLSLSLPAVESRPANPPEIRLAKVSPWLDECLKREPIIAARVIGDALAATNRVAMSDSKRLDLAERYWDAAGLLWLPLERQFVRASHPLSGEALEAAKAALTLSNELAVAYKHLLASEADKRLSMGGQRLLVALVHRCLQGTTRVLVNSYLSYAPVPPRTWHDAHLIYAFARERNIHLIPVAPDQPEATPDRLTIQMLLLALANPYGFLPGQLPIVLRYVQEYAHWAKLTDIAPVHRMAKAVAIVPVGHDFPPFSANKGGSIEGSKLFLLTFDLAFQIQEQLRALEAGYA
Ga0119880_1034675Ga0119880_10346751F001844MIQPMLSWFRSFSDPLASANNASRWIGQLPAADAATLQTEALEVVAGFPGARRDAGPGQVEALLRIDGRVEPIIAELTRQYTQNYQKSTNIESRLWHSVFDLVKAFIAAYGIALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSHWIPAQWREFHELYEFARMRGWQREQLIFGVGAFAKPGVSFEQEYLKTLLLMRLDSGNFTPDQVEWVARQLEDWTPTLALTPPPSEGAPFFVDLTGTTGLRRRDRAQAGGRVMFLGFLAPNGSLLP
Ga0119880_1037414Ga0119880_10374141F021596EVREFAGHADIRTTEVYFVRREEDAEVAARRIQIRITGCKSE*
Ga0119880_1038714Ga0119880_10387141F087603FATVAQAEGVSLSVARRLLRVVEGAKATPSVPALGRATREAGTRAGGLLRVLDEAARPKVKQATADEIFLAEGPS*
Ga0119880_1039770Ga0119880_10397704F035652LATGSNDIDEIYRRMAVIRREQHTNVRESVAGAETVVDWGRYTWTYPWIALGAAAVVGYLVYTGCHQTVTTDTTSPADGTNAGEPVTGVKAKGQEGSRIGQRLLLTAWDIVFPVALRAGQNFVLHWLEQQHPPSTVGRAGLASVAGAREGWTGRA
Ga0119880_1050458Ga0119880_10504582F033377VAQERMARDLGDAVPTLLYPRIEEGAHTMAFIEACVRSQASGRWETVARSAAPPRPDGAV
Ga0119880_1062514Ga0119880_10625142F075045HGTTSMMVDHHSTNVTSGRYSGSGDAGTFNMSLSPMWDRPASIGTVAGVYTRSTSNGYTMTMTMSANGQLTASDSRGCVINGSVGVPDATHNLYRIDATVTSCGSLDGTYSGMGALLDADAMQDWMTAMHPLEHGGHSHGGSMMGGSPMMGRNTVPTGQRNLFMFSLVNSQNAMMDALAR
Ga0119880_1066949Ga0119880_10669493F009010MVDLPESFYLLVNSPMLIAIPIVAFAALALWSHSVTAWVAAGAWNLYLIYELGMKAEEFCTGAACLKRTPLYAVYPMLGVLALAIVEVYVRSGLSRMRTHTRT
Ga0119880_1077265Ga0119880_10772652F084316MEQCGMAKFEVGDRVIITEGDFKGERGAIVDKKLIGDGLVVALEDSGREIKTEEGHVNLLERD*
Ga0119880_1098037Ga0119880_10980371F033941RLQYLALLKRLLRQWAIPPARQFNRLPSRARVVMCAGLAGVWQYSKGVHAGVNRPPTGLPPMANCQVINHTPAGYALRQTDSVPAALRIGELVALRIEGRNSLQIAMVRWFRNTLKGSGLEFGCELLSDNPEAAAAAAEDAAPGSYQPVVVLPEDAASGPEASPAQIIVPAGAFGLEQAVTLRRGKDNGFAVLTKLVEQGPGFELYEFVSVG*
Ga0119880_1106922Ga0119880_11069221F064854LSGLDASEARFLHSAVRDAVRMAKRNGNYSARFHNYRVRAWREPLGSRLVTVTWRVSLYDRPLFGDTEILEAPLCAAV*
Ga0119880_1127147Ga0119880_11271472F092530MSRPRTVSLWETVGLLALGAITVFCLMPTLQKNYAEPHLRASLFATIGACLIYPAAILVYARKAISQRNGDWKI
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