NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013900

3300013900: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 250



Overview

Basic Information
IMG/M Taxon OID3300013900 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118643 | Gp0137859 | Ga0117820
Sample NameHuman gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 250
Sequencing StatusPermanent Draft
Sequencing CenterChalmers University of Technology
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size66675936
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F047125Metagenome / Metatranscriptome150N
F051935Metagenome143N
F056309Metagenome137N
F062845Metagenome130N
F082887Metagenome / Metatranscriptome113Y
F090513Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0117820_1000015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales62494Open in IMG/M
Ga0117820_1000482All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes5338Open in IMG/M
Ga0117820_1002236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2179Open in IMG/M
Ga0117820_1016546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae749Open in IMG/M
Ga0117820_1017238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes732Open in IMG/M
Ga0117820_1018584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales703Open in IMG/M
Ga0117820_1025894All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena586Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0117820_1000015Ga0117820_10000153F082887MEKIKAIAKYAINILAIISALIAGINAVDGITIPYAVQIIQVIAVIQGVISTYLLGQKVVRNRGENRENNRNKPKV*
Ga0117820_1000482Ga0117820_10004823F029444MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0117820_1002236Ga0117820_10022362F051935MKEEKRMKRLLGLLMAVMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE*
Ga0117820_1016546Ga0117820_10165461F090513MLKIFEIAKYVRKMEWKLLHIKHILYMRPFGALKIVPQSVGNKNGTKAVLQGWAAAFV
Ga0117820_1017238Ga0117820_10172381F047125LLMVLGVMLSGFRTADALDHIRREILRQEGKRRGWWS*
Ga0117820_1018584Ga0117820_10185841F062845FILHEKFRSDNNEQRKEQFQKRFERYIVDELSNIAPSKSCA*
Ga0117820_1025894Ga0117820_10258941F056309MPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD*EAASPV
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