NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014808

3300014808: Human fecal microbial communities from obese patients in Germany - AS66_3



Overview

Basic Information
IMG/M Taxon OID3300014808 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151615 | Ga0134443
Sample NameHuman fecal microbial communities from obese patients in Germany - AS66_3
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size152219093
Sequencing Scaffolds10
Novel Protein Genes13
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042936Metagenome157N
F066905Metagenome126Y
F067844Metagenome125N
F074964Metagenome119N
F090484Metagenome108N
F097172Metagenome / Metatranscriptome104Y
F097493Metagenome104Y
F098313Metagenome104N
F099406Metagenome103N
F105374Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134443_1000044Not Available150298Open in IMG/M
Ga0134443_1000072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis115923Open in IMG/M
Ga0134443_1000358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia35408Open in IMG/M
Ga0134443_1000824All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis16804Open in IMG/M
Ga0134443_1002605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes5627Open in IMG/M
Ga0134443_1003457All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae4387Open in IMG/M
Ga0134443_1003536All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4313Open in IMG/M
Ga0134443_1008184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2219Open in IMG/M
Ga0134443_1009276All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2011Open in IMG/M
Ga0134443_1037177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae695Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134443_1000044Ga0134443_100004425F090484MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGMVSRRMKSYNNIAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNYNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0134443_1000044Ga0134443_10000443F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKAADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134443_1000044Ga0134443_100004441F099406MSCNEYFLVTLESKSTPVRHKYTNLTDEWYDPDGVKYEDPDTIAKIEEQATDKNRIGDNTLYQKLIEIHSQGESIKSDIGDIGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLEPLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGMDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0134443_1000044Ga0134443_100004473F098313MKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENDMTIRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN*
Ga0134443_1000072Ga0134443_10000722F097172MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHLEGCDKKGYVMDGFSKAAFYKDLNSLPAVKTGKTTINVPAVTSSVKSISKEKGNPIYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYTDVIEETYEYQRDFVNTIPTTKIKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK*
Ga0134443_1000358Ga0134443_100035823F066905MPEESRNCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR*
Ga0134443_1000824Ga0134443_10008248F105374LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPXXXXFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0134443_1002605Ga0134443_10026058F097493MKNGQAQFYERGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLMLQIAELKAGVGGE
Ga0134443_1003457Ga0134443_10034571F097172MKKNVLKKLMCAVLAATCVATAVVPAMADDVVTAEAATKKVTSVYKYHLEGYDKKGYPVKFSKSSFYKDLNSLPAVKMGKTTINVPAVTASVKSVSKEKGNPRYQSFVKFKAPKTGKYVVTLNNLQGTDDKSLKSLYYDVFKPIKDGGKYTLELIDYDIVGDYTMLYENNYLARLRTILDNYKAEHPEYANVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK*
Ga0134443_1003536Ga0134443_10035364F042936TKEGIMKTSGIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0134443_1008184Ga0134443_10081842F097172MLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGKPEYVTYVKFKAPKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQISRTGKKYCLTSIEDSDTVGKYDTLYENNYLARLRTILNNYKAEHPEYTDVIEETYIDYTDYVNKRPVNKIKFTTKLKKGRTYVFSVDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK*
Ga0134443_1009276Ga0134443_10092762F097172AVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYNKNGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKSVKEGKKYKLEYLYPDTVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNSLGKTTCKPYFTTHGYNEQSCLYNTNYLKAYSFDMNIEYKK*
Ga0134443_1037177Ga0134443_10371771F067844MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVI
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