NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019712

3300019712: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_5-6_MG



Overview

Basic Information
IMG/M Taxon OID3300019712 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217635 | Ga0193969
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_5-6_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size107443621
Sequencing Scaffolds40
Novel Protein Genes40
Associated Families36

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
Not Available22
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F002682Metagenome / Metatranscriptome537Y
F003361Metagenome / Metatranscriptome492Y
F003471Metagenome / Metatranscriptome485Y
F004928Metagenome / Metatranscriptome418Y
F005819Metagenome / Metatranscriptome389Y
F010065Metagenome309Y
F012678Metagenome / Metatranscriptome278Y
F012917Metagenome / Metatranscriptome276Y
F013895Metagenome / Metatranscriptome267Y
F018289Metagenome236Y
F020094Metagenome / Metatranscriptome226Y
F021441Metagenome / Metatranscriptome219Y
F022317Metagenome / Metatranscriptome215Y
F023596Metagenome209Y
F024806Metagenome / Metatranscriptome204Y
F026571Metagenome / Metatranscriptome197N
F035554Metagenome / Metatranscriptome172N
F040603Metagenome / Metatranscriptome161N
F041807Metagenome / Metatranscriptome159N
F044508Metagenome / Metatranscriptome154Y
F058634Metagenome / Metatranscriptome134Y
F064729Metagenome128Y
F065688Metagenome / Metatranscriptome127N
F070125Metagenome / Metatranscriptome123N
F074892Metagenome / Metatranscriptome119Y
F074893Metagenome / Metatranscriptome119Y
F079647Metagenome / Metatranscriptome115N
F080060Metagenome / Metatranscriptome115Y
F080061Metagenome115Y
F084254Metagenome / Metatranscriptome112Y
F087950Metagenome / Metatranscriptome110Y
F088283Metagenome / Metatranscriptome109Y
F090988Metagenome / Metatranscriptome108Y
F092076Metagenome / Metatranscriptome107Y
F105203Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193969_1001513All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2081Open in IMG/M
Ga0193969_1003884All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1449Open in IMG/M
Ga0193969_1007186All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1139Open in IMG/M
Ga0193969_1007328Not Available1130Open in IMG/M
Ga0193969_1008273All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1077Open in IMG/M
Ga0193969_1012050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria930Open in IMG/M
Ga0193969_1014516All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae867Open in IMG/M
Ga0193969_1015752Not Available840Open in IMG/M
Ga0193969_1018806All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium786Open in IMG/M
Ga0193969_1021411Not Available748Open in IMG/M
Ga0193969_1026620Not Available687Open in IMG/M
Ga0193969_1029112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales665Open in IMG/M
Ga0193969_1031166Not Available647Open in IMG/M
Ga0193969_1032596Not Available637Open in IMG/M
Ga0193969_1032948All Organisms → Viruses635Open in IMG/M
Ga0193969_1035373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium618Open in IMG/M
Ga0193969_1035971Not Available615Open in IMG/M
Ga0193969_1037982Not Available603Open in IMG/M
Ga0193969_1039429Not Available595Open in IMG/M
Ga0193969_1041254Not Available586Open in IMG/M
Ga0193969_1043061Not Available576Open in IMG/M
Ga0193969_1043271Not Available575Open in IMG/M
Ga0193969_1043521All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria574Open in IMG/M
Ga0193969_1044983Not Available567Open in IMG/M
Ga0193969_1049155All Organisms → cellular organisms → Bacteria550Open in IMG/M
Ga0193969_1049432Not Available549Open in IMG/M
Ga0193969_1049626All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon548Open in IMG/M
Ga0193969_1050133Not Available546Open in IMG/M
Ga0193969_1050849Not Available543Open in IMG/M
Ga0193969_1051418Not Available541Open in IMG/M
Ga0193969_1052139All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.539Open in IMG/M
Ga0193969_1052489Not Available537Open in IMG/M
Ga0193969_1053017Not Available536Open in IMG/M
Ga0193969_1053649Not Available533Open in IMG/M
Ga0193969_1054873All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium529Open in IMG/M
Ga0193969_1059651All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium515Open in IMG/M
Ga0193969_1059911Not Available514Open in IMG/M
Ga0193969_1060320Not Available513Open in IMG/M
Ga0193969_1060489All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales512Open in IMG/M
Ga0193969_1064997All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193969_1001513Ga0193969_10015131F004928MSQALHSIESEPNHTVEIVVHITETLGEQQRGDLVAALEGNGGIATAEFCPLRYHLILVKYDRDLYSSQDVLERVTSHDVSARLIGPV
Ga0193969_1003884Ga0193969_10038842F074892MATMTAKYASIVLLGLLLSGCAEKGENVYKSWVGPDRPNMAIVTLRLGDDVRDITVRERVLPRSEYGTLLLVPGQYTLYEDDGASIGITIRPVLINTEKARANGELILGHTYTLRAGKSKDGGERALWIEDARSGEVFIDTR
Ga0193969_1007186Ga0193969_10071862F074892GLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIRERVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALWIEDARSGEVFVDRR
Ga0193969_1007328Ga0193969_10073282F088283MKTRALILLTSLGVFSGCATGSDVTGSYSPSCVAFEGNTIELSENRFTWDKFTDEVTVDDTGNEVDPFPGLPVRGVYAIEDDVVSLTTDVGELAAELYIVRRPGQVYLLTESEFEAWQKDSTVPDCALLLGSGE
Ga0193969_1008273Ga0193969_10082732F010065VRGESGISFTGLYICGVISLVMLVLKLSVMDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNLVRWIDGSETSYWFWLMSGKVEVLAAFGVLSVLALFAYWLRLGRVLKASD
Ga0193969_1012050Ga0193969_10120502F001488MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYITIKLAYGSNVSQEKK
Ga0193969_1014516Ga0193969_10145161F084254IVIEILAEVIRQSKRHPRADQVASALAMRGLPIAEKDVMTIFDQYDIEKKIADSH
Ga0193969_1015752Ga0193969_10157521F064729VISKCSKIHKDSKIHKKAYAELSGYLNSVEECANVGELDATVLWAVRFMQRMHELEKEIGLHVLEKRVHSTHKE
Ga0193969_1018806Ga0193969_10188061F090988IVMAGVAAQMLAGKDIKNVDARYITEQMAAQNYPIGSSNTIRNSLLQYQQILIQQARTNLRSKYPEPVQLNSINYPT
Ga0193969_1021411Ga0193969_10214111F074893PSRLYAIADNGSLTIRISGPMDLLLTSALRECCHDTATDYSRYIVDFQDVSIVRDSGLALLLMLKRLANRTGATLHVINGNTDLMHRCYKLGIQSASL
Ga0193969_1026620Ga0193969_10266201F003471YQQPKPCPVPDFAGYPDKVANTQTNKMKGSGAATKGTGFSKRTA
Ga0193969_1029112Ga0193969_10291123F041807MARLELTLNFPKSFEIKTFSVKSEKKLSPLAKLILQSVQFKHFYYV
Ga0193969_1031166Ga0193969_10311661F024806MVTNSDFNFTNNEAVILELPFSEHIEELRQRLFHIFWIILFLTCTAFIEVKLLVKILELPVDN
Ga0193969_1032596Ga0193969_10325961F074892DLTRKTPVAPIMVAMKIVSAAIVMSGLLLSACAEKGDGIYRTWVGPDRSNMAIVTLLLGDDVRDVIIRERNLPRSQYGTILLVPGNYVLYERDNASIGITIRPALVITEQAKANGELILGHTYTLQAGKSKESGKRALWIEDARSGEVFIDAR
Ga0193969_1032948Ga0193969_10329482F021441MKKIKHNDLLPWFIQDHGTLPASYLKSCRSFFDSIKLQASSIKPQASNQKNLHKPGTRVKNRFNRKI
Ga0193969_1035373Ga0193969_10353732F026571VGTKYVTTDTEDKAIEHTQEMLDHIHKSLNMQVFSIVEVTETK
Ga0193969_1035971Ga0193969_10359711F044508VVIKTNGSDKTEIKKKLKISGHQQRWPRPLPGDMLTF
Ga0193969_1037982Ga0193969_10379821F018289MTQFTRSQLNLLRKQLQETIDNANLSDITIDVGNCSYSGGEATFKVKCILKGAKTREQIDLAYYAEMHGIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIADAT
Ga0193969_1039429Ga0193969_10394291F023596RMASKSLQVSLFVCAVLIALLFLKLMFDMNSSMREMTGHVGAISQDVSEMQNSMNSMNESMLRMEQSIHGLGQAFSQGSKQFQQMNPAGMMQQVLPGSDQRTR
Ga0193969_1041254Ga0193969_10412541F035554MAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTATPNKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKDFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQS
Ga0193969_1043061Ga0193969_10430611F065688MTIEEDIEHLKRHDSFNRFIDLIKQMREECIAEMHEVPTDKLQQLSGRILSYDQIITMADWAETSSSE
Ga0193969_1043271Ga0193969_10432712F003361MKLTLNGALDLSRSINSQTIWNKRSTDYFNQLAKELKQDSLNALENKPSPRSQAGRGNKNTGATRRSVFTAKLGNTNRLRMSEGFKLATDRPYAPFIHGKPIFRGFSPIRRTRPFFPPYKEGSSLAKWAKRGQPKMNPFLVARAISKRGLKMK
Ga0193969_1043521Ga0193969_10435211F058634TLATPPSGPNEQIDTVDVSFYCEGIDPVLGVPRPAQSSPETFTINTSTSQGPEPYNTIGLFEKQGLPAGPCHFDFFAVSNTGNTECTGELTLVVSTDMTTSFEVVLACIHTPRYGGVRSDGSFNQCAEYRQILVTPTTQAIGNLVDVRTEVYDPDGDDVTVGVQAVGACSNVEFSNGDTAASCETVSGCD
Ga0193969_1044983Ga0193969_10449831F012917KFLRFPLNDCGNYEKYSSFSEVNQAWDRKKHLRRKRWSQE
Ga0193969_1049155Ga0193969_10491551F080061KLKRQLFGILNFGRCDLPFDLTQGGGERVEPFGICVLLFEIFYY
Ga0193969_1049432Ga0193969_10494322F070125SAIDNRRWYSHRHEPTQLFDTDPVTTAEQRRQWIEALHAYQDDSERLFGLVASLANLLDRTLVVETMESVLGITAVHDGDCVIFDDLAIRFGSDDRVKSVFRTIGGSGTGN
Ga0193969_1049626Ga0193969_10496263F002682RRYIMPQIGSDEKPVTFRSPIYKNTHGSKGANPRPGFYTQEYKDNWERIFGGKNAKKENNSEKND
Ga0193969_1050133Ga0193969_10501331F022317MSTIKIDTKTLAPIVITALLSAFGWVFNSIEEIKTHQNACDAMVLEMNSELDMLESNFTELL
Ga0193969_1050849Ga0193969_10508492F079647MKFYFLHLFKILPPTLKVSWGFFLIGFLALTVALFTATSWQSYGGLGCLVVGYVVFIIDGVNPNRTKDDAGRAGFYGGLIGTTLAGLIGAIVSALILAIVFGVTSLIDKSIPLTVMQSLHIVGVLFAFLV
Ga0193969_1051418Ga0193969_10514182F005819QQVGESNIDFKRFQYYLGLGASRSYEKVSNNFTITDRRVKQIAAKNQWQDRIKAINKMLNEQIISEVFAQVGETARDLAEELKPIIFKVINEINERDLASMNPTELKGILDICYKIISQIYGLGQPQVTVNHIEQPQIRFKWDWEQDDEPDY
Ga0193969_1052139Ga0193969_10521392F040603MMYYTKHKTLADTSETALFTVPAGYVLWVNYIFIANHGGSTNNVSCWWENGAGVDQLYFLDNNSLNSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNG
Ga0193969_1052489Ga0193969_10524893F013895MKLGKNNFVVTFKTEKEVSDYIGMHIPEEQRLLWLGFFIANNYIAQRLEDDGVELKKXVEDPGQQWP
Ga0193969_1053017Ga0193969_10530171F092076MFSHKIDKLQEIIFIRASGTPTTVTMIDHIQSVLNDPDYDPKYNSIIVLEENTHIAGVPTEKIELIRRVLDGYAQQRKGRHWAVVAPNERQEAFLKLNLELISPVKLKIRIFKSEEDALNWLKGR
Ga0193969_1053649Ga0193969_10536492F044508VVIKTNRSDKTEIKKFFLKISGPQQRWPRPLPGAILIPPALLVVADS
Ga0193969_1054873Ga0193969_10548732F105203MQQANHAEQMVKRFRELVEDAGDTLADSHYSELKLIIEAGLDTALLENMEKVSKQLSSLAHDIQHNADFFD
Ga0193969_1059651Ga0193969_10596511F023596MTSKSLQALLFVCAGVIALIFVKLMFDMSRSMSKMTEHVGAISKDVNEMQNSMHTMNESMLRMEESIHGLGETFSQGSKQFQQMNPAGIMQQVLPDSGQRTR
Ga0193969_1059911Ga0193969_10599111F080060CFACSFVRPLGRMYPGPQVELMSRRLRGFTLACRFLCSVVVAGPLIYVSFVSDGDAYHFLALVLLAPVAGLVLMANSLFCLFRYRHLESPWMGLGFALVGVTGVLVAWHFLPQFRM
Ga0193969_1060320Ga0193969_10603202F012678MLNQHSLEEIAEIHNLLIDLKKEYEEGIKPILIKNSSVIFRNLHTIPKL
Ga0193969_1060489Ga0193969_10604891F020094YYLRXLLLFVFTNLHNLTVKTNYFISYLFFAFFNNQKLISYVITINLSPTNTLINVKTIKGNPRFFYSAGMCNLQKKQKIRQPKAIITILRALLLKTKLFKTKPVAVHFNNLFFNHQTYILKKLKQKIFTKLVTSYTCFSHNGCRLKKKKRIKIRTRKFSKEXLSGLKWQ
Ga0193969_1064997Ga0193969_10649972F087950MQCWINGPATGGIDDKIKMAIILLKTNIPAFHHSIIPFS
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