NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019727

3300019727: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_3-4_MG



Overview

Basic Information
IMG/M Taxon OID3300019727 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217642 | Ga0193976
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_3-4_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117227740
Sequencing Scaffolds35
Novel Protein Genes37
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
Not Available17
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_301
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium2
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F001926Metagenome / Metatranscriptome616Y
F003225Metagenome / Metatranscriptome499Y
F004928Metagenome / Metatranscriptome418Y
F006971Metagenome / Metatranscriptome361Y
F012457Metagenome280Y
F012534Metagenome / Metatranscriptome280N
F022317Metagenome / Metatranscriptome215Y
F023488Metagenome / Metatranscriptome210Y
F024678Metagenome / Metatranscriptome205Y
F027522Metagenome194Y
F029111Metagenome / Metatranscriptome189Y
F037736Metagenome / Metatranscriptome167Y
F045104Metagenome / Metatranscriptome153Y
F045765Metagenome / Metatranscriptome152N
F047386Metagenome / Metatranscriptome150N
F048676Metagenome / Metatranscriptome148Y
F053659Metagenome / Metatranscriptome141Y
F057384Metagenome / Metatranscriptome136Y
F063710Metagenome129Y
F064729Metagenome128Y
F069469Metagenome / Metatranscriptome124N
F070125Metagenome / Metatranscriptome123N
F071259Metagenome122Y
F071910Metagenome121Y
F074892Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F078730Metagenome / Metatranscriptome116Y
F085725Metagenome111Y
F086605Metagenome110Y
F086821Metagenome / Metatranscriptome110Y
F089490Metagenome / Metatranscriptome109Y
F095489Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193976_1000605All Organisms → cellular organisms → Bacteria → Proteobacteria2817Open in IMG/M
Ga0193976_1002161Not Available1810Open in IMG/M
Ga0193976_1006068Not Available1233Open in IMG/M
Ga0193976_1009032All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1062Open in IMG/M
Ga0193976_1013503All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont913Open in IMG/M
Ga0193976_1013683All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata909Open in IMG/M
Ga0193976_1016111All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_30852Open in IMG/M
Ga0193976_1018080All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium813Open in IMG/M
Ga0193976_1021722All Organisms → Viruses → environmental samples → uncultured virus758Open in IMG/M
Ga0193976_1025584Not Available713Open in IMG/M
Ga0193976_1026684All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont702Open in IMG/M
Ga0193976_1029177All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.679Open in IMG/M
Ga0193976_1033488All Organisms → cellular organisms → Bacteria646Open in IMG/M
Ga0193976_1033801Not Available644Open in IMG/M
Ga0193976_1034761Not Available637Open in IMG/M
Ga0193976_1035781Not Available631Open in IMG/M
Ga0193976_1039593All Organisms → Viruses608Open in IMG/M
Ga0193976_1040584Not Available603Open in IMG/M
Ga0193976_1042021Not Available595Open in IMG/M
Ga0193976_1042390All Organisms → cellular organisms → Bacteria → Proteobacteria593Open in IMG/M
Ga0193976_1042984Not Available591Open in IMG/M
Ga0193976_1043026Not Available590Open in IMG/M
Ga0193976_1048173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium567Open in IMG/M
Ga0193976_1049048All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana564Open in IMG/M
Ga0193976_1053022Not Available548Open in IMG/M
Ga0193976_1055854Not Available538Open in IMG/M
Ga0193976_1056497All Organisms → cellular organisms → Eukaryota → Sar536Open in IMG/M
Ga0193976_1057945All Organisms → cellular organisms → Bacteria532Open in IMG/M
Ga0193976_1058544All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium530Open in IMG/M
Ga0193976_1059620Not Available527Open in IMG/M
Ga0193976_1059970Not Available526Open in IMG/M
Ga0193976_1060962Not Available523Open in IMG/M
Ga0193976_1064008All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.514Open in IMG/M
Ga0193976_1064329Not Available514Open in IMG/M
Ga0193976_1067453Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193976_1000605Ga0193976_10006054F074892MTAMMQKYALIALLGLLLSACSERGENVYRTWVGPDRSTMAIVTLRLGEDVRDITIRERVLPRSEYGAILLVPGAYTLYEHDCANIGISISPMLINVEKARANGELIIGHTYVLRAGKSKETGERALWIEDARSGEVFIDRR
Ga0193976_1002161Ga0193976_10021612F037736VPWRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMDAAAANHIWWLNTNPFTGLLLHINSYRIRHLPFGFLTASEFQSRSTCLIKK
Ga0193976_1004399Ga0193976_10043991F076890MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESAPGTSITLYTTPAAHPMPMGLDESRCARMDWKTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAVILDTGSADYLVSCGCFWR
Ga0193976_1006068Ga0193976_10060681F063710MNKPRQRSLRVRVEHEPNRFSDDCLERIYEQLHPTKSREVTPDKDNKQGEVEPQKGKGGQ
Ga0193976_1009032Ga0193976_10090323F001488MARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPGEYITIKL
Ga0193976_1009242Ga0193976_10092422F076890MVVNRTVTTLLMAALGPGLSACSTPGFEEYCRYSDEYSIREADPQSLALVLGVRRGLAMEAPFVVVRSLSEHNRGAALKLHATAEPHPMPVSLDESRCAAVDWNTYTLTVDEEEWSAFWSDDRNAPFEIAIAFLDNNESLLVSKFGAAIVDTDAADYLVSCGCYWK
Ga0193976_1013503Ga0193976_10135031F045765MKNYSSKSGDTTAINIDGRLYDLLRKFCDKEGRRLRDFVEDALENAIYTDESIKVLNEEIKSLKKKEAKYDYAFRRGFQKGFYISFCALHGQILLEPDDEALEILKNDPFR
Ga0193976_1013683Ga0193976_10136832F045104MAKYAPGPRPAPLRNAPPWCGLWSGPRRSAAVLFDPVIHRQLVLSLANTEQARATLLDWLAEQSAHLVIPDTLLAQPGLHHPNQIPVAVWIAPSALLEAIRFTTGLTTRAPKHTAALLARWPTAPALRPFLRRLAVSPQSHQLSLL
Ga0193976_1016111Ga0193976_10161111F004928MEQALHSIDAYPDRTVEIVVHITETLGEQRRKDLVAALEENRGITTAEFCPLRYHLMLVRYDRDMYSSQDVLARVESQN
Ga0193976_1018080Ga0193976_10180802F053659VNIDQAKPKRQKRTITLYLGNTLGEYEATYLTETGLKALIRRVETADSINWGCLATGHEAGCPRQLHFTHHDSYSRWVKHFNGTQSVVVIHRVRCLDCGAVFSVQPSFLIRYKRYDTDAT
Ga0193976_1021722Ga0193976_10217223F024678MESEVLMRVALKLFLFFIGMALSMLGIMVALHSQQHTILGVLILFSGMTTIWGSLPSYD
Ga0193976_1025584Ga0193976_10255842F029111GPGNGGGGNRTAGSSPDSDDSQTVSRTGIDENTSKEHERNALPDILMTMSQIPDVNREFAEVGAMFRVLDVLRRSGRR
Ga0193976_1026684Ga0193976_10266842F037736VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMSAADANHIWWLNAKPFTGLLLHLNSYRILHLPCDFLNML
Ga0193976_1029177Ga0193976_10291771F006971MIYQGIEYKKHQKVKFVFPTDLRIVDPQTKKILWRYGKIQFFAKNTKSAWILENGTKESIKISLFCVLPVN
Ga0193976_1033488Ga0193976_10334881F048676MLFRYSRLCGTASDAVDAVKWEIPQGFKLLKFKMSECLKNIVKLTI
Ga0193976_1033801Ga0193976_10338012F078730MAISNVIQPNRLTNMQEMETHVTGPDGANRLLTYSGMAEVELCGGLPHPRWSLEVVCFDIGRVYDTANGEDVINIVAT
Ga0193976_1034761Ga0193976_10347612F012457MMIKDLEMSKDLDRDALSAVRGGRNSIEQGGVYAPVANAGGGFSFGSPTTIVSAPVNAPSAVLNDNDLHLKLANKSTSVL
Ga0193976_1035781Ga0193976_10357811F037736QILWLLANPLWTHGIGESGSKTITGWLLMGAAVTNHIYWLDTNPFTGLLLHPKSYRIMHLPFVHSNVCLV
Ga0193976_1039593Ga0193976_10395931F012534MDQKDKDIRWAASQFLYEDLPEDYQNWPDIKLFKFLKHYAWKPFEHYSGEWLWCHIQDLAVQVRKYAQEN
Ga0193976_1040584Ga0193976_10405841F089490MYHLMKSTKFTLDHLVSGLMSLYRQTEIGHFQQFRAALGACEIANNKGRSRFYVLNESGQEYYDGTW
Ga0193976_1042021Ga0193976_10420212F086605PVDSVAYFWMMVDPWIHSTTDPFPADIGDYICPITAVFAGGECGAAESVVSVSEIGTKAT
Ga0193976_1042390Ga0193976_10423902F071259MKRKQSRIIFGTAISAAVIAVAIDHTRQRLPEAEKQLASQDAVIIIDEGEELPSENSDDCGKPARLGRQASPCSL
Ga0193976_1042984Ga0193976_10429841F069469MKIKILVGSDFSLDKKDKRVEAGEVLNLPDKIAKALIKNNAAEKFDSKMMKEEEE
Ga0193976_1043026Ga0193976_10430262F047386MIRQENMPFQIDRPVFVKYPFQSLGRQLKKGEEFKWKEIGVSEDKALILYTQGFIHHNSEFEVELKVGDGLEQLDVAGLHGLVDSINNKVKSKTPSDAEFQKKKCKKSKIVDKQRGLIRSWRRNYGHMETD
Ga0193976_1048173Ga0193976_10481731F053659MNIDQPKPKRQNRTITLHLGNTLTEYETTYLSEAGIKALIDRVEIADSVDWGCLATGHKEGCPRQLQFTHHDSYTRSAKHFNGTQSEVVIHRVRCLECGAVFTVQPSFIIRYKRYDTDATEK
Ga0193976_1049048Ga0193976_10490481F086821PEDVDNFLTDAAWAIRSTYHTVLKSTPGAAIFGRDMLFDIPFLADWTAVGKRRQDLVDQSAAKENAKRVDFDYAVGQKVILRKDGVLRKAEQKYEGPFTITQVHTNGTVRIQRGSLSERLSIRRIEPYHEVV
Ga0193976_1053022Ga0193976_10530222F064729FKLGPGVGGGRRAMGDLKEWLKYWRKVISKCSKIHKDSKIHKKAYAELSGYLNSVEECANVGELDATVLWAVRFMQRMHELEKEIGLHVLEKRVHSTHKE
Ga0193976_1055854Ga0193976_10558541F085725MNLLLATALLLISAVAVGFYLFFLGLRQRKRSPGLGLTHASLALSGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENRPPSMTAVTVHAIMGLFGIALLIINLF
Ga0193976_1056497Ga0193976_10564971F001926VRHEDIPEINNPNKRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERKRIKIEKLLTLGYTTSGDP
Ga0193976_1057945Ga0193976_10579451F070125VTTAEERRQWIEALQAYRDDSERLFALVASLANLLDEEMVVETMESVLGIAAVHDEDCVIFDDLAIRFGSDGRVK
Ga0193976_1058544Ga0193976_10585441F057384GDSNQARRLHELLDLMLMERETEDGKLWLTDHGKMLLADMHRQLSRVEGSGHRLHETVLDAVQLKPRQGHWRDTCEYLHDLRVAIAVANELCEQRTGGGKANVSKAAKIVADRGEFELEAGRIREVYEEVASTLGGFREIAHC
Ga0193976_1059620Ga0193976_10596201F022317MSTIKIDTKTLAPIVITALLSAFGWVFNSIEEIKSHQNACDAMVLEMNSELDMLESN
Ga0193976_1059970Ga0193976_10599702F023488FSPIRRTRPFFPPYKEGSSLAKWAKRGQPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVK
Ga0193976_1060962Ga0193976_10609621F071910MRPIVVAALIAALLGAFGLALGRSAANAVERAVTRHATGVERALSL
Ga0193976_1064008Ga0193976_10640082F003225MTPELETYFNNYNELFNHEGFKQLVQELSNNATRLADIQSVKDAEDLHFRKGQVAALASVINLPDTIAAAREQA
Ga0193976_1064329Ga0193976_10643292F027522CLPQSHRGTEANAYFVVLFCTTVNVGAALAANNPSDRDEFAAEAAPKLKTSVTSVANI
Ga0193976_1067453Ga0193976_10674531F095489MVTNEATPVSKTRMNTPAHNDVVDWNLVAERRFEDIEELNYLVQGWDFEFHQLKAGRSPAELLQFGRPEFMLSRFYFEQPYHQRG
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