Metagenome / Metatranscriptome Family F089490

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089490
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	70 residues
Representative Sequence	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLRAALGACEVANNGGGSRYYLLNESGQEYYGGTWID
Number of Associated Samples	58
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.73 %
% of genes near scaffold ends (potentially truncated)	17.43 %
% of genes from short scaffolds (< 2000 bps)	76.15 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.211 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands (15.596 % of family members)
Environment Ontology (ENVO)	Unclassified (35.780 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (44.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.37% β-sheet: 39.18% Coil/Unstructured: 48.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
d.128.1.5: GatB/GatE catalytic domain-like	d1zq1c3	1zq1	0.60251
d.128.1.5: GatB/GatE catalytic domain-like	d2f2ab2	2f2a	0.60227
d.58.29.0: automated matches	d3mr7a1	3mr7	0.58065
b.7.1.1: PLC-like (P variant)	d1yrka1	1yrk	0.57964
e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain	d1jiha2	1jih	0.57239

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00999	Na_H_Exchanger	15.60
PF04358	DsrC	7.34
PF04041	Glyco_hydro_130	3.67
PF05013	FGase	1.83
PF00483	NTP_transferase	1.83
PF01841	Transglut_core	1.83
PF00989	PAS	0.92
PF13592	HTH_33	0.92
PF13439	Glyco_transf_4	0.92
PF02397	Bac_transf	0.92
PF08379	Bact_transglu_N	0.92
PF13701	DDE_Tnp_1_4	0.92
PF06165	Glyco_transf_36	0.92
PF00005	ABC_tran	0.92
PF09361	Phasin_2	0.92
PF13591	MerR_2	0.92
PF00076	RRM_1	0.92
PF00990	GGDEF	0.92
PF13185	GAF_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	15.60
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	15.60
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	15.60
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	15.60
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	15.60
COG2920	Sulfur transfer complex TusBCD TusE component, DsrC family (tRNA 2-thiouridine synthesizing protein C)	Translation, ribosomal structure and biogenesis [J]	7.34
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	3.67
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	1.83
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	1.83
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3459	Cellobiose phosphorylase	Carbohydrate transport and metabolism [G]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.21 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.21 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.21 %
Unclassified	root	N/A	46.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.95 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	22.02 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.75 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.92 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	10.09 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.92 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.92 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	3.67 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1.83 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.92 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.92 %
Spirochaetaceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae	0.92 %
Candidatus Kentron	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron	0.92 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	3.67 %
Thioalbus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalbus	1.83 %
Spirochaeta	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta	0.92 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.92 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.92 %
Candidatus Kentron	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron	0.92 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.79 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	3.67 %
Thioalbus denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalbus → Thioalbus denitrificans	1.83 %
Spirochaeta thermophila	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → Spirochaeta thermophila	0.92 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.92 %
Gammaproteobacteria bacterium SG8_15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	0.92 %
Candidatus Kentron	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron	0.92 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001687\|WOR8_10024894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	5591	Open in IMG/M
3300004000\|Ga0055458_10006548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	2192	Open in IMG/M
3300004000\|Ga0055458_10023244	All Organisms → cellular organisms → Bacteria → Proteobacteria	1372	Open in IMG/M
3300004001\|Ga0055450_10023443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	1988	Open in IMG/M
3300004001\|Ga0055450_10080630	All Organisms → cellular organisms → Bacteria → Proteobacteria	1149	Open in IMG/M
3300004001\|Ga0055450_10101932	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300004001\|Ga0055450_10108256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1000	Open in IMG/M
3300004012\|Ga0055464_10058194	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300004018\|Ga0055452_10031656	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300004097\|Ga0055584_102656659	Not Available	502	Open in IMG/M
3300005826\|Ga0074477_1413843	All Organisms → cellular organisms → Bacteria → Proteobacteria	5597	Open in IMG/M
3300009430\|Ga0114938_1068515	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300009506\|Ga0118657_10025564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	9270	Open in IMG/M
3300009509\|Ga0123573_10018106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9888	Open in IMG/M
3300009509\|Ga0123573_10218416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1874	Open in IMG/M
3300009509\|Ga0123573_10269873	All Organisms → cellular organisms → Bacteria → Proteobacteria	1656	Open in IMG/M
3300009509\|Ga0123573_10940757	Not Available	807	Open in IMG/M
3300009509\|Ga0123573_11146115	Not Available	725	Open in IMG/M
3300009509\|Ga0123573_11196434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	709	Open in IMG/M
3300009509\|Ga0123573_11586552	Not Available	608	Open in IMG/M
3300010412\|Ga0136852_10020808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7027	Open in IMG/M
3300010412\|Ga0136852_10165250	All Organisms → cellular organisms → Bacteria	2608	Open in IMG/M
3300010412\|Ga0136852_10457546	Not Available	1240	Open in IMG/M
3300010412\|Ga0136852_10724339	Not Available	953	Open in IMG/M
3300010412\|Ga0136852_11236832	Not Available	709	Open in IMG/M
3300010412\|Ga0136852_11953976	Not Available	553	Open in IMG/M
3300010997\|Ga0139324_1043831	Not Available	967	Open in IMG/M
3300014260\|Ga0075307_1012850	All Organisms → cellular organisms → Bacteria → Proteobacteria	1417	Open in IMG/M
3300014264\|Ga0075308_1024367	Not Available	1095	Open in IMG/M
3300017963\|Ga0180437_10027254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5925	Open in IMG/M
3300017963\|Ga0180437_10801731	Not Available	679	Open in IMG/M
3300019698\|Ga0193986_1018315	Not Available	617	Open in IMG/M
3300019705\|Ga0193981_1043367	Not Available	561	Open in IMG/M
3300019727\|Ga0193976_1040584	Not Available	603	Open in IMG/M
3300019753\|Ga0194010_1072722	Not Available	605	Open in IMG/M
3300021278\|Ga0210332_140134	Not Available	519	Open in IMG/M
3300021294\|Ga0210325_1063264	Not Available	547	Open in IMG/M
3300021346\|Ga0210335_1260557	Not Available	614	Open in IMG/M
3300025554\|Ga0210060_1003336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2974	Open in IMG/M
3300025554\|Ga0210060_1004734	All Organisms → cellular organisms → Bacteria → Proteobacteria	2373	Open in IMG/M
3300025563\|Ga0210112_1011676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1943	Open in IMG/M
3300025565\|Ga0210110_1001669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6645	Open in IMG/M
3300025565\|Ga0210110_1003759	All Organisms → cellular organisms → Bacteria → Proteobacteria	4288	Open in IMG/M
3300025583\|Ga0210085_1004896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	4891	Open in IMG/M
3300025583\|Ga0210085_1063695	All Organisms → cellular organisms → Bacteria → Proteobacteria	1035	Open in IMG/M
3300025801\|Ga0210097_1058560	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300025801\|Ga0210097_1060025	Not Available	867	Open in IMG/M
3300025883\|Ga0209456_10099171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1287	Open in IMG/M
3300026031\|Ga0208909_1027945	Not Available	575	Open in IMG/M
3300027917\|Ga0209536_100021935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8901	Open in IMG/M
3300027917\|Ga0209536_100061349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	4880	Open in IMG/M
3300027917\|Ga0209536_100222507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2367	Open in IMG/M
3300027917\|Ga0209536_100443729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1621	Open in IMG/M
3300027917\|Ga0209536_101129105	Not Available	963	Open in IMG/M
3300028598\|Ga0265306_10076261	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300028599\|Ga0265309_10339430	Not Available	973	Open in IMG/M
3300028600\|Ga0265303_10216912	Not Available	1469	Open in IMG/M
3300028600\|Ga0265303_10652458	Not Available	856	Open in IMG/M
3300028600\|Ga0265303_10851536	Not Available	750	Open in IMG/M
3300028600\|Ga0265303_11794934	Not Available	513	Open in IMG/M
3300029826\|Ga0134619_1075212	Not Available	733	Open in IMG/M
3300031229\|Ga0299913_11354837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	668	Open in IMG/M
3300031256\|Ga0315556_1007236	All Organisms → cellular organisms → Bacteria → Proteobacteria	5631	Open in IMG/M
3300031256\|Ga0315556_1018264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalbus → Thioalbus denitrificans	3196	Open in IMG/M
3300031256\|Ga0315556_1026362	All Organisms → cellular organisms → Bacteria → Proteobacteria	2552	Open in IMG/M
3300031371\|Ga0307423_1046109	All Organisms → cellular organisms → Bacteria → Proteobacteria	1463	Open in IMG/M
3300031563\|Ga0307436_1016461	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
3300031665\|Ga0316575_10004640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalbus → Thioalbus denitrificans	4841	Open in IMG/M
3300031665\|Ga0316575_10174013	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300031691\|Ga0316579_10099275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1393	Open in IMG/M
3300031691\|Ga0316579_10174146	Not Available	1040	Open in IMG/M
3300032061\|Ga0315540_10000195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	33354	Open in IMG/M
3300032061\|Ga0315540_10071443	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300032061\|Ga0315540_10453144	Not Available	507	Open in IMG/M
3300032133\|Ga0316583_10014858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2804	Open in IMG/M
3300032133\|Ga0316583_10163918	Not Available	774	Open in IMG/M
3300032136\|Ga0316201_10950718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_15	724	Open in IMG/M
3300032136\|Ga0316201_11528874	Not Available	552	Open in IMG/M
3300032168\|Ga0316593_10175637	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300032231\|Ga0316187_10554217	Not Available	859	Open in IMG/M
3300032231\|Ga0316187_10558069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	856	Open in IMG/M
3300032251\|Ga0316198_10030508	Not Available	3300	Open in IMG/M
3300032251\|Ga0316198_10071679	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → Spirochaeta thermophila	2069	Open in IMG/M
3300032251\|Ga0316198_10537693	Not Available	638	Open in IMG/M
3300032252\|Ga0316196_10367660	Not Available	619	Open in IMG/M
3300032252\|Ga0316196_10510796	Not Available	511	Open in IMG/M
3300032259\|Ga0316190_10473698	Not Available	845	Open in IMG/M
3300032260\|Ga0316192_10292120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron	1122	Open in IMG/M
3300032260\|Ga0316192_10493211	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300032260\|Ga0316192_11187027	Not Available	509	Open in IMG/M
3300032262\|Ga0316194_10128482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1634	Open in IMG/M
3300032262\|Ga0316194_10846780	Not Available	575	Open in IMG/M
3300032272\|Ga0316189_10845272	Not Available	695	Open in IMG/M
3300032272\|Ga0316189_11464321	Not Available	514	Open in IMG/M
3300033291\|Ga0307417_10220002	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300033429\|Ga0316193_10362730	Not Available	1151	Open in IMG/M
3300033429\|Ga0316193_11069078	Not Available	642	Open in IMG/M
3300033429\|Ga0316193_11302675	Not Available	577	Open in IMG/M
3300033524\|Ga0316592_1147545	Not Available	554	Open in IMG/M
3300033527\|Ga0316586_1009572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1454	Open in IMG/M
3300033528\|Ga0316588_1042044	Not Available	1094	Open in IMG/M
3300033528\|Ga0316588_1072058	Not Available	849	Open in IMG/M
3300033528\|Ga0316588_1141777	Not Available	614	Open in IMG/M
3300033529\|Ga0316587_1059597	Not Available	706	Open in IMG/M
3300033529\|Ga0316587_1067028	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300033529\|Ga0316587_1074666	Not Available	637	Open in IMG/M
3300033529\|Ga0316587_1076898	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300034782\|Ga0373573_0008643	All Organisms → cellular organisms → Bacteria	2594	Open in IMG/M
3300034782\|Ga0373573_0117034	Not Available	787	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.32%
Host-Associated	Host-Associated	14.68%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	81.65%
Plants	Host-Associated → Plants	14.68%
Terrestrial	Environmental → Terrestrial	3.67%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	61.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.68%
Sediment	Environmental → Aquatic → Sediment	12.84%
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Soil	Environmental → Terrestrial → Soil	3.67%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.83%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	19.27%
Wetlands	Environmental → Aquatic → Marine → Wetlands	18.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.84%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.01%
Oceanic	Environmental → Aquatic → Marine → Oceanic	5.50%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	5.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.83%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	19.27%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	15.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.84%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	8.26%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	5.50%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.67%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.75%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.83%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%

Habitat	Taxonomy	Distribution
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	15.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.68%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	11.93%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	9.17%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	9.17%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	5.50%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	5.50%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	5.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	3.67%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.75%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.75%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Sediment	1.83%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.83%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.92%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.92%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.92%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001687	Deep Marine Sediments WOR-3-8_10	Environmental	Open in IMG/M
3300004000	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2	Environmental	Open in IMG/M
3300004001	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1	Environmental	Open in IMG/M
3300004012	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2	Environmental	Open in IMG/M
3300004018	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D2	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005826	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA	Environmental	Open in IMG/M
3300009430	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300010997	ECM15MPS05_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)	Environmental	Open in IMG/M
3300014260	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014264	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2_rd	Environmental	Open in IMG/M
3300017963	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG	Environmental	Open in IMG/M
3300019698	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_2-3_MG	Environmental	Open in IMG/M
3300019705	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_2-3_MG	Environmental	Open in IMG/M
3300019727	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_3-4_MG	Environmental	Open in IMG/M
3300019753	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_6-7_MG	Environmental	Open in IMG/M
3300021278	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.302 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021294	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.264 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021346	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.374 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025554	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025563	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025565	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025583	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025801	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025883	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 (SPAdes)	Environmental	Open in IMG/M
3300026031	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2_rd (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300028598	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)	Environmental	Open in IMG/M
3300028599	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300029826	Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031256	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10	Environmental	Open in IMG/M
3300031371	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-10	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031665	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3	Host-Associated	Open in IMG/M
3300031691	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA	Host-Associated	Open in IMG/M
3300032061	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10	Environmental	Open in IMG/M
3300032133	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA	Host-Associated	Open in IMG/M
3300032136	Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow	Environmental	Open in IMG/M
3300032168	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032231	Coastal sediment microbial communities from Maine, United States - Cross River worm burrow 1	Environmental	Open in IMG/M
3300032251	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic	Environmental	Open in IMG/M
3300032252	Coastal sediment microbial communities from Maine, United States - Eddy sediment 2 cm	Environmental	Open in IMG/M
3300032259	Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2	Environmental	Open in IMG/M
3300032260	Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrow	Environmental	Open in IMG/M
3300032262	Coastal sediment microbial communities from Maine, United States - Cross River sediment 1	Environmental	Open in IMG/M
3300032272	Coastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow	Environmental	Open in IMG/M
3300033291	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10	Environmental	Open in IMG/M
3300033429	Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2	Environmental	Open in IMG/M
3300033524	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033527	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033528	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033529	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300034782	Sediment microbial communities from coastal wetland in Texas, United States - D0606M02	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WOR8_100248943	3300001687	Marine Sediment	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID*
Ga0055458_100065483	3300004000	Natural And Restored Wetlands	MYRLMKSEKFTLDHLTAGLGSFYRQTQVKHFPQFRPALGACEVANNSGRSRYYLLNELGQEYFGGTWVD*
Ga0055458_100232442	3300004000	Natural And Restored Wetlands	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVSNNGGGSRHYLLNEFGQEYYGGTWID*
Ga0055450_100234433	3300004001	Natural And Restored Wetlands	MYHLMRSEKLTLDHSVSGLLSTYRQSEIGQFPTFRAANEACELANNDGTSRCYVLNASGQEYYDGTWID*
Ga0055450_100806302	3300004001	Natural And Restored Wetlands	MYRLMKSEKFTLNYLTSGLASFYRQRQIKCFGRLRAALGACEVANNGGGSRYYLLNESGQEYYGGTWID*
Ga0055450_101019322	3300004001	Natural And Restored Wetlands	MYRLMKPEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID*
Ga0055450_101082562	3300004001	Natural And Restored Wetlands	MYRLMKSQKFPLDQPSGLISSYRQTRVKHFRKFRSALGACKVANNDNLSRYYLLNELGQEYYGGTWID*
Ga0055464_100581942	3300004012	Natural And Restored Wetlands	MTDGSDRASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNGGGSGYYLLNESGQEYYGGTWID*
Ga0055452_100316561	3300004018	Natural And Restored Wetlands	MYRLMKSERFTLIHMTSGLISFYRQTQVKHFRQFRSALGACEAANNSGRTRHYLLNESGQEYYSGTWID*
Ga0055584_1026566591	3300004097	Pelagic Marine	YHLMKSEKFTLDHLISGFMSSYRHTEIRHFRQLRAALGACEVANHKGRPSYYIVNESGQEYYDGTWVD*
Ga0074477_14138437	3300005826	Sediment (Intertidal)	MYRLMKSEKFTLDDAVSGLVSSYRQTEIGHFEKFRAAHHACEVANNDGWSRCYVINESGQEYYGHTWID*
Ga0114938_10685153	3300009430	Groundwater	MKSERFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRYYLLNASGQEYYQGTWID*
Ga0118657_100255645	3300009506	Mangrove Sediment	MYRLMKSQKLTLEYLTSGLKSFYRQTEIDQFQQFRFALGACEDANNHGKSRYYLLNESGQEWYGGTWID*
Ga0123573_100181064	3300009509	Mangrove Sediment	MYRLMKSEKFTLEHLTSGLRSYYRQTPVEHFQQLRSALDACVVANNDGRSRHYVLNASGQEYYGGTWID*
Ga0123573_102184162	3300009509	Mangrove Sediment	MYHLMKSEKFTLDHLVSGLMSSYRQTEIGHFQQFCAALGACEVANKKGKTRYYVLNESGQEYYDGTWID*
Ga0123573_102698733	3300009509	Mangrove Sediment	MYRLMKSEKFTLEHLTSGLTSFYRQTPVEHFQQLRSALDACKVANNDGRSRHYLLNASGQEYYGGTWID*
Ga0123573_109407572	3300009509	Mangrove Sediment	MYHLMKSEKFTLEHSASGRMSLYRQTEIGHYDKLTAARKACEFANSNGNPRCYVVNESGQEYYDGAWID*
Ga0123573_111461151	3300009509	Mangrove Sediment	MYHLMKSEKFTLDHLVSGLMSSYRQSEIGHFQKFRTALGACEVANNKGRSRYYVLNESGQEYYDGTWID*
Ga0123573_111964342	3300009509	Mangrove Sediment	MYRLMKSEKFTLEHLTSGLTSFYRQTPVEHFQQLRSALDAWAVANNDGRSRHYLLNASGQEYYGGTWFD*
Ga0123573_115865521	3300009509	Mangrove Sediment	LKSEKFTLDHVVSGLMSSYRQTEIGDFQQFRAALGACEVANNKGRSRYYVLNESGQEYYDGTWID*
Ga0136852_100208085	3300010412	Mangrove Sediment	MYRLMKSEKFTLEHLTSGLRSFYRQTPVEHFQQLRSALDACVVANNDGRSRHYVLNASGQEYYGGTWID*
Ga0136852_101652501	3300010412	Mangrove Sediment	LTSGLKSFYRQTEIDQFQQFRFALGACEDANNHGKSRYYLLNESGQEYYGGTWIE*
Ga0136852_104575463	3300010412	Mangrove Sediment	MYRLMKSEKFTLEHLTSGLTPFSRQTPVEHFQQLRSALDACKVANNDGRSRHYLLNASGQEYYGGTWID*
Ga0136852_107243392	3300010412	Mangrove Sediment	MYHLMKSEKFTLDHVVSGLMSSYRQTEIGDFQQFRAALGACEVANNKGRSRYYVLNESGQEYYDGTWID*
Ga0136852_112368322	3300010412	Mangrove Sediment	MYRLMKSQKLTLEYLTSGLKSFYRQTEIDQFQQFRFALGACEDANNHGKSRYYLLNESGQ
Ga0136852_119539761	3300010412	Mangrove Sediment	LTSGLKSFYRQTEIDQFQQFRFALGACEDANNHGKSRYYLLNESGQEWYGGTWID*
Ga0139324_10438311	3300010997	Sediment	MYRLMKSEKFTLEHLTSGLTSFYRQTQIDHFQQFRSALGACEVANNHGRSRYYVLNESGQEYYDGTWID*
Ga0075307_10128502	3300014260	Natural And Restored Wetlands	MKSEKFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVSNNRGGSRHYLLNEFGQEYYGGTWID*
Ga0075308_10243673	3300014264	Natural And Restored Wetlands	MKSEKFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVSNNRGGSRHYLLNELGQEYYGGTWID*
Ga0180437_100272543	3300017963	Hypersaline Lake Sediment	MYRLMKSEKFTLDHPISGLMSSYRQTEMGHFEQFVAAHGACEVANYKGSSRYYVLNESGQEYYEGIWID
Ga0180437_108017312	3300017963	Hypersaline Lake Sediment	MYRLMKSEKFTLDHPISGLMSSYRQTEMGNFEQFVAAHGACEVANYRGSSRYYVLNESGQEYFKGTWID
Ga0193986_10183152	3300019698	Sediment	MYHLMKSTKFTLDHLVSGLMSLYRQTEIGHFQQFRAALGACEIANNKGRSRFYVLNESGQEYYDGTWID
Ga0193981_10433672	3300019705	Sediment	VAKGSATPNDKESSMYHLMKSEKFTLDHLVSGLMSSYRQSEIGHFRRFRTALGACQVANNKGRSRYYVLNESGQEYYDGTWID
Ga0193976_10405841	3300019727	Sediment	MYHLMKSTKFTLDHLVSGLMSLYRQTEIGHFQQFRAALGACEIANNKGRSRFYVLNESGQEYYDGTW
Ga0194010_10727222	3300019753	Sediment	MYRLMKSEKFTLDHAISGLMSLYRQTEMGHFEQFPAAHGACEVANNKGKSRYYVLNESGQEYYDGIWID
Ga0210332_1401342	3300021278	Estuarine	MYRLMKSEKFTLDDAVSGLVSSYRQTEIGHFEKFRAAHHACEVANNDGWSRCYVINESGQEYYGHTWID
Ga0210325_10632641	3300021294	Estuarine	MYHLMKSEKFTLDHLISGVMSSYRQTEIGHFQQFRTALGACEVANDRGRSRYYVVNESGQEYYDGTW
Ga0210335_12605571	3300021346	Estuarine	MYHLMKSEKFTLDHLVSGLMSSYRQSEIGHFQQFRTALGACEVANNKGRSRYYVLNESGQEYYDGTWID
Ga0210060_10033363	3300025554	Natural And Restored Wetlands	MYRLMKSEKFTLDHLTAGLGSFYRQTQVKHFPQFRPALGACEVANNSGRSRYYLLNELGQEYFGGTWVD
Ga0210060_10047343	3300025554	Natural And Restored Wetlands	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVSNNGGGSRHYLLNEFGQEYYGGTWID
Ga0210112_10116762	3300025563	Natural And Restored Wetlands	MTDGSDRASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNSGRSRYYLLNELGQEYYGGTWID
Ga0210110_10016693	3300025565	Natural And Restored Wetlands	MYHLMRSEKLTLDHSVSGLLSTYRQSEIGQFPTFRAANEACELANNDGTSRCYVLNASGQEYYDGTWID
Ga0210110_10037592	3300025565	Natural And Restored Wetlands	MYRLMKPEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0210085_10048964	3300025583	Natural And Restored Wetlands	MYRLMKSERFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRYYLLNASGQEYYQGTWID
Ga0210085_10636952	3300025583	Natural And Restored Wetlands	MYRLMKSEKFTLNYLTSGLASFYRQRQIKCFGRLRAALGACEVANNGGGSRYYLLNESGQEYYGGTWID
Ga0210097_10585602	3300025801	Natural And Restored Wetlands	MTDGSDRTSHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLSAALGACEVANNGGGSGYYLLNESGQEYYGGTWID
Ga0210097_10600251	3300025801	Natural And Restored Wetlands	MYRLMMSERFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRYYLLNASGQEYYQGTWID
Ga0209456_100991712	3300025883	Pelagic Marine	VEKDSSTLDDKEPSMFRLMKSEKFTIDHLAWGLTSSYRHSEIHHFRKFCAAHQACEVANDKGRARYFVLNKSGQEYYEGIWID
Ga0208909_10279451	3300026031	Natural And Restored Wetlands	MTDDPDRASNSSDNDLSVYRLMKSEKFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVSNNGGGSRHYLLNEFGQEYYGGTWID
Ga0209536_1000219358	3300027917	Marine Sediment	MTDGPDRASNASDKDLSMYRLMKSEKFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVANNAGGPRYYLLNESGQEYYGGTWID
Ga0209536_1000613495	3300027917	Marine Sediment	MTAGPDMTGRPTAIEKESPMYRLMKSEKFTLDHLTSGLISFYRQTQVKHFRQFRSALGACEVANNNGRSRYYLLNESGQEFYGGTWID
Ga0209536_1002225073	3300027917	Marine Sediment	MYHLMKSEKFTLDHLVSGLMSSYRQSEIGHFQKFRTALGACEVANNKGRSRYYVLNESGQEYYDGTWID
Ga0209536_1004437291	3300027917	Marine Sediment	MYRLMKSEKFTLDHPISGLMSSYRQTEMGHFEQFVAAHGACEVANYKGSSRYYVLNESGQEYYEGTWID
Ga0209536_1011291053	3300027917	Marine Sediment	MYRLMKSEQFTLDHLTSGLVSFYRQTQVKCFGRLRAALGACEVTDNGGGSRYYLLNESGQEYYRGI
Ga0265306_100762611	3300028598	Sediment	MYHLMKSEKFTLDHAISGLMSSYRQTEMGHFEQFPAAHEACELANNKGRPRYYIVNESGQEYYDGSWID
Ga0265309_103394301	3300028599	Sediment	VYHLLKSEKFTIDHALSGLMSSYRQIEIDCFQQFDSALQACEAANNKGMSRFYILNKSGQEYYNGSWIE
Ga0265303_102169122	3300028600	Sediment	VYPLIKSEKFTIDYAISGLMSSYRQIEIDCFQQFDSALQVCEAANNKGMSRFYILNKSGQEYYNGSWIE
Ga0265303_106524581	3300028600	Sediment	MYHLMKSEKFTLDHAISGLMSSYRQTEMGHFEQFPAAHEACEVANSKGRSRYYVVNESGQEYYGGSWMD
Ga0265303_108515361	3300028600	Sediment	MYRLMKSEKHTLDHLVSGRLASYRQSEVTHFQQVLDALEACELANNKGRSRCYVLNESGQEYYKGTWID
Ga0265303_117949341	3300028600	Sediment	MYHLMKSVKFTLDHAISGLMSSYRQTEIGHFEQFPAAHEACEVANNKGKSRYYVLNESGQEYYDGTWID
Ga0134619_10752122	3300029826	Marine Sediment	MYHLMKSQKFTLDHLVSGLMSSYRQTEIGRFQRFSAALGACEVANKKGRSRYYVLNESGQEYYSGTWID
Ga0299913_113548371	3300031229	Soil	MYRLMKSDRFTLDHATSGRMSLYRQTEIDQFEQFPAAAAACTAANRKGGIRHYLVNASGREYYGGIWID
Ga0315556_10072367	3300031256	Salt Marsh Sediment	MYRLMKSEKFTLDHLTSGLVSFYRQTRVKYFQQFHPALCACEVANNSGRSRYYLLNEVGQEYFGGTWID
Ga0315556_10182642	3300031256	Salt Marsh Sediment	MYRLMKSEKFTLGHLTSGLVSFYRQTQVKRFGRLPAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0315556_10263622	3300031256	Salt Marsh Sediment	MTDGSDRASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNGGGSGYYLLNESGQEYYGGTWID
Ga0307423_10461094	3300031371	Salt Marsh	MTDGSDRASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNGGGSG
Ga0307436_10164614	3300031563	Salt Marsh	MEFPMFRLMKSDKITLDHTVEGHLSAYHQSEVRQFRTFRAARAASEVANNDGTSRCYVLNASGQEYYDGQWID
Ga0316575_100046403	3300031665	Rhizosphere	MYRLMKSEKFTLDHPISGLTSSYRQTEMGHFEQFVAAHGACEVANYKGSSRYYVLNESGQEYYEGIWID
Ga0316575_101740131	3300031665	Rhizosphere	DHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRYYLLNASGQEYYQGTWID
Ga0316579_100992752	3300031691	Rhizosphere	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0316579_101741462	3300031691	Rhizosphere	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGGRSRYYLLNECGQEYYAGTWID
Ga0315540_1000019532	3300032061	Salt Marsh Sediment	MYRLMKSEKFTLDHLTSGLVSFYRQTRVKYFQQFHPALCACEVANNSGRSRYYLLNELGQEYFGGTWID
Ga0315540_100714432	3300032061	Salt Marsh Sediment	MYRLMKSEKFTLDHLTSGLVSFYQQTQVKRFGRLPAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0315540_104531441	3300032061	Salt Marsh Sediment	KFTLDHLTSGLVSFYRQTQVKRFGRLRAALGACEVSNNRGGSRHYLLNELGQEYYGGTWI
Ga0316583_100148582	3300032133	Rhizosphere	MYRLMKSEKFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRYYLLNASGQEYYQGTWID
Ga0316583_101639181	3300032133	Rhizosphere	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFERLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0316201_109507182	3300032136	Worm Burrow	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLRAALGACEVANNGGGSRYYLLNESGQEYYGGTWID
Ga0316201_115288742	3300032136	Worm Burrow	MYHLMKSEKFTLVHATSGPMIAYRQREIGHFERFPEAHAACEVHNNEGTPRCYVVNESGQEYYDGTWIE
Ga0316593_101756373	3300032168	Rhizosphere	MTDGPERASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNGGGSRYYLLNESRQEYYGGTWID
Ga0316187_105542171	3300032231	Worm Burrow	SMYRLMKSEKFTSDHLVSGLVSFYRQTQVKCFCRLGAALGACKVANNGDGSRYYLLNESGQEYFGGIWID
Ga0316187_105580692	3300032231	Worm Burrow	MYRLMKSEEFTLDHLTGGLVSFYRQTQVKCFGRLRAALGACEVANNGGASRHYLLNESGQEYYGGTWID
Ga0316198_100305082	3300032251	Sediment	MYRLMKSDKFTLDYLTAGLTSFYRQTQVKCFQQFRSALGACEVANNRSRSRYYLLNESGQEYYGGTWID
Ga0316198_100716793	3300032251	Sediment	MYRLMKSEKFTLDDVTSGLISFYRQTAVECFPQLYVALGACEVANNNGSSRHYLLNESGQEYYGGTWID
Ga0316198_105376933	3300032251	Sediment	MYRLMKSEKFTLDHLSSGLISFYRQTQVTHFQQFSPALCACEVANNSGRSHYYVLNETGQEYYSGTWID
Ga0316196_103676601	3300032252	Sediment	MKSEQFTLDHLTSGLVSFYRQTQVKCFGRLRAALGACEVANNGGGSRYYLLNESGQEYYGGTWID
Ga0316196_105107961	3300032252	Sediment	GHPISSDKESSMYRLMKSEKFTLDYLTSGLLSFYRQTQVKHFQQFRSALGACEIANDNGRSRYYLLNESGQEYYGGTWID
Ga0316190_104736981	3300032259	Worm Burrow	MYRLMKSEKFTSDHLVSGLVSFYRQTQVKCFCRLGAALGACKVANNGDGSRYYLLNESGQEYFGGIWID
Ga0316192_102921202	3300032260	Worm Burrow	MTDGPDRASNSSDKDLSMYRLMKSEQFTLDHLTSGLVSFYRQTQVKCFGRLRAALGACEVANNGGGSRYYLLNQSGQEYYSGTWID
Ga0316192_104932111	3300032260	Worm Burrow	MYHLMKSEKFTLVHATSGPMVAYRQREISHFERFPEAHAACEVHNNKGTPRCYVVNESGQEYYDGTWIE
Ga0316192_111870271	3300032260	Worm Burrow	MYHLMKSEKFTLDHLVSGLMSSYRQTEIGHFQRFRAALGACEVANNKNRSRYYVVNESGQEYYEGTWID
Ga0316194_101284823	3300032262	Sediment	MYRLMKSEEFTLDHLTGGLVSFYRQTQVKCFGRLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0316194_108467802	3300032262	Sediment	MYRLMKSEKFTLDNLTSGLLSFYRQTQVKHFEQIRSALGACEIANDNGRSRYYLLNESGQEYYGGTWID
Ga0316189_108452723	3300032272	Worm Burrow	KSDKLTLDHLVAGLMSSYRQTEMGHFQQFRAALGACEVANNKGRSRFYVLNESGQEYYDGTWID
Ga0316189_114643212	3300032272	Worm Burrow	FTVDHLTSGLISFYRQTRIECFQQLRVALGACEVANDNGSSRYYLLNESGQEYYGGTWID
Ga0307417_102200021	3300033291	Salt Marsh	MYRLMKSEKFTLDHLTSGLLSFYRQTQVKCFGRLRAALGACEVANNGGGSRYYLLNESGHEYYGGTWID
Ga0316193_103627301	3300033429	Sediment	MYRLMKSEKFTFEHVISGSMSSYRQTEVDHFQQFDAALGACEVANNEGRSHFYVLNESGQEYYGDTWID
Ga0316193_110690782	3300033429	Sediment	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLRAALGACEVANNGGGSRYYLLNQSGQEYYSGTWID
Ga0316193_113026751	3300033429	Sediment	MYHLMKSDKLTLDHLVAGLMSSYRQTEIGHFQQFRAALGACEVANNEGRSRFYVLNES
Ga0316592_11475451	3300033524	Rhizosphere	MYRLMKSEKFTLDHLTSGLVSFYRQTRVKYFQQFHPALCPCEVANNSGRSRYYLLNELGQEYFGGTWID
Ga0316586_10095722	3300033527	Rhizosphere	MYRLMKSERFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRHYLLNASGQEYYQGTWID
Ga0316588_10420442	3300033528	Rhizosphere	MYRLMKSEKRVVDLRVSGLTSSYRQTTVEHFPQLQAALGACRAANSGGASRHYLLNETGQEYYDGTWID
Ga0316588_10720582	3300033528	Rhizosphere	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGRGSRYYLLNECGQEYYAGTWID
Ga0316588_11417771	3300033528	Rhizosphere	MTDGPDRASNASDKDLSMYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFGRLHAALGACEVANNGGGSRYYLLNECGQEYYGGTWID
Ga0316587_10595972	3300033529	Rhizosphere	MYHLMKSEKITLDHLVSGLMSSYRQSEIGHFQKFRTALGACEVANNKGRSRYYVLNESGQEYYDGTWID
Ga0316587_10670281	3300033529	Rhizosphere	MTDGPDRASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNGGGSGQEYHGGTWID
Ga0316587_10746661	3300033529	Rhizosphere	MYRLMKSEKFTLDHPISGLTSSYRQTEMGHFEQFVAAHGACEVANYKGNSRYYVLNESGQ
Ga0316587_10768982	3300033529	Rhizosphere	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFVRLHAALGACEVANNGGGSRYYLLNECGQEYYG
Ga0373573_0008643_2073_2333	3300034782	Sediment	MTDGPDRASNASDKDLSMYRLMKSEKFTLDHLTSGLVSFYRQTQVKGFGRLRAALGACEVANNAGGPRYYLLNESGQEYYGGTWID
Ga0373573_0117034_203_412	3300034782	Sediment	MYRLMKSEKFTLEHLTSGLTSFYRQTQIDHFQQFRSALGACEVANNHGRSRYYVLNESGQEYYGGTWID

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089490

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences