Sample 3300033529

Basic Information
IMG/M Taxon OID	3300033529 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0135940 \| Gp0344172 \| Ga0316587
Sample Name	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	194375212
Sequencing Scaffolds	52
Novel Protein Genes	53
Associated Families	38

Dataset Contents

Total Genome Size

194375212

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	39
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus

All Organisms → cellular organisms → Bacteria → Proteobacteria

Ecosystem Assignment (GOLD)
Name	Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Ecosystem Assignment (GOLD)

Name

Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Alabama
Coordinates	Lat. (^o)	30.2619	Long. (^o)	-88.2383	Alt. (m)	N/A	Depth (m)	.05 to .07
Location on Map

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Location Information

Location

USA: Alabama

Coordinates

Lat. (^o)

30.2619

Long. (^o)

-88.2383

Alt. (m)

N/A

Depth (m)

.05 to .07

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000817	Metagenome / Metatranscriptome	879	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001346	Metagenome / Metatranscriptome	718	Y
F003108	Metagenome / Metatranscriptome	506	Y
F003207	Metagenome / Metatranscriptome	501	Y
F003269	Metagenome / Metatranscriptome	496	Y
F004927	Metatranscriptome	418	Y
F005366	Metagenome / Metatranscriptome	403	Y
F005632	Metagenome / Metatranscriptome	394	Y
F006508	Metagenome / Metatranscriptome	371	Y
F006782	Metagenome / Metatranscriptome	364	Y
F007847	Metagenome / Metatranscriptome	343	Y
F008512	Metagenome / Metatranscriptome	332	Y
F023352	Metagenome / Metatranscriptome	210	Y
F025922	Metagenome / Metatranscriptome	199	Y
F030135	Metagenome / Metatranscriptome	186	Y
F031503	Metagenome / Metatranscriptome	182	Y
F035541	Metagenome / Metatranscriptome	172	Y
F038530	Metagenome / Metatranscriptome	165	Y
F043157	Metagenome / Metatranscriptome	157	Y
F045104	Metagenome / Metatranscriptome	153	Y
F052615	Metagenome / Metatranscriptome	142	Y
F055469	Metagenome / Metatranscriptome	138	Y
F056191	Metagenome / Metatranscriptome	138	Y
F067247	Metagenome / Metatranscriptome	126	Y
F073586	Metagenome / Metatranscriptome	120	Y
F074360	Metagenome / Metatranscriptome	119	Y
F077370	Metatranscriptome	117	Y
F081387	Metagenome / Metatranscriptome	114	Y
F081897	Metagenome / Metatranscriptome	114	Y
F089490	Metagenome / Metatranscriptome	109	Y
F090440	Metagenome / Metatranscriptome	108	N
F093160	Metagenome / Metatranscriptome	106	Y
F094910	Metagenome / Metatranscriptome	105	Y
F100490	Metagenome / Metatranscriptome	102	N
F105196	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0316587_1000859	Not Available	3424	Open in IMG/M
Ga0316587_1006277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1810	Open in IMG/M
Ga0316587_1010053	Not Available	1509	Open in IMG/M
Ga0316587_1019960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1136	Open in IMG/M
Ga0316587_1022758	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1076	Open in IMG/M
Ga0316587_1027325	Not Available	997	Open in IMG/M
Ga0316587_1030619	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
Ga0316587_1032272	Not Available	928	Open in IMG/M
Ga0316587_1033642	Not Available	912	Open in IMG/M
Ga0316587_1036118	Not Available	884	Open in IMG/M
Ga0316587_1036919	Not Available	876	Open in IMG/M
Ga0316587_1037473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	870	Open in IMG/M
Ga0316587_1041443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	832	Open in IMG/M
Ga0316587_1042969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	819	Open in IMG/M
Ga0316587_1043994	Not Available	810	Open in IMG/M
Ga0316587_1044137	Not Available	809	Open in IMG/M
Ga0316587_1044259	Not Available	808	Open in IMG/M
Ga0316587_1048708	Not Available	774	Open in IMG/M
Ga0316587_1049846	Not Available	765	Open in IMG/M
Ga0316587_1050497	Not Available	761	Open in IMG/M
Ga0316587_1050651	Not Available	760	Open in IMG/M
Ga0316587_1051804	Not Available	753	Open in IMG/M
Ga0316587_1052628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	747	Open in IMG/M
Ga0316587_1052964	Not Available	745	Open in IMG/M
Ga0316587_1053766	Not Available	740	Open in IMG/M
Ga0316587_1055827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	727	Open in IMG/M
Ga0316587_1056201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	725	Open in IMG/M
Ga0316587_1056604	Not Available	723	Open in IMG/M
Ga0316587_1057341	Not Available	718	Open in IMG/M
Ga0316587_1059597	Not Available	706	Open in IMG/M
Ga0316587_1061302	Not Available	697	Open in IMG/M
Ga0316587_1061731	Not Available	695	Open in IMG/M
Ga0316587_1064456	Not Available	681	Open in IMG/M
Ga0316587_1065883	Not Available	675	Open in IMG/M
Ga0316587_1067028	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
Ga0316587_1067291	Not Available	668	Open in IMG/M
Ga0316587_1070688	Not Available	653	Open in IMG/M
Ga0316587_1073999	Not Available	640	Open in IMG/M
Ga0316587_1074666	Not Available	637	Open in IMG/M
Ga0316587_1076898	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
Ga0316587_1081840	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	611	Open in IMG/M
Ga0316587_1088934	Not Available	588	Open in IMG/M
Ga0316587_1089457	Not Available	586	Open in IMG/M
Ga0316587_1092893	Not Available	577	Open in IMG/M
Ga0316587_1103119	Not Available	550	Open in IMG/M
Ga0316587_1103521	Not Available	549	Open in IMG/M
Ga0316587_1105992	Not Available	543	Open in IMG/M
Ga0316587_1106291	Not Available	543	Open in IMG/M
Ga0316587_1118151	Not Available	518	Open in IMG/M
Ga0316587_1118487	Not Available	518	Open in IMG/M
Ga0316587_1121143	Not Available	513	Open in IMG/M
Ga0316587_1126349	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0316587_1000859	Ga0316587_10008591	F100490	NIGQFTRLLRSLELRAVSQRTVLLLRDQKLLFRMRDCLEGSIIHLPTGDLML
Ga0316587_1006277	Ga0316587_10062771	F045104	NVPAFCGLWSGPRRATAVLFDTLTQHQRALSLANTALACTTLLDWLAEHNAQLVIPDTLLRAPSLNPTRQSAVVVWIAPSALLEAIRFATGLTTRAPRQTAALLARWPSAPALRPFLRRLNTARPADQLSLL
Ga0316587_1010053	Ga0316587_10100531	F056191	VFATILIHNGCEARCRHALTAEMFETFPSGGSMHASVILDGIDGRAQQERVEHVA
Ga0316587_1019960	Ga0316587_10199602	F043157	VVGDKLMGILDERFRDCICLNIYDRIDSMSMLEELVMIKRAKSLERRIR
Ga0316587_1022758	Ga0316587_10227581	F004927	RTHPLQIEFHQRNTADGFRVQWDMPKSAPLGGVEAFVREAKRMDGAQPTTVGYGITSDPIRELSYDSLFAAVNLSIKEPWRVIDVDQTGCSVQDCNGYTLRKMKLAATGEDVVERITINEETGTVTYNKCDASGRPGDVERVLAIHTPLRLEFYERSTSSGLRVDWKAPFGVARETFSNIVQLARQLQSSPSDVVGYGLASKPFTNVNQDALWRAMLYSMRNPAECGLKVDGVRVQDMRGYMQRTMRILEKPGSPTVTDNIRVIESAQEITYRPAVNGEESEEERVFALRTEPLRLEMFCRHSKDEMRLDWQAPRSVCLPVFDATAAAAQRM
Ga0316587_1027325	Ga0316587_10273252	F003207	MPDTGRFIAWSKQEQSTLLQQLELLESGKVRTGEDEGDGWVDTTEQSINRIKKRLAELEELLTEAGSGTASKPGER
Ga0316587_1030619	Ga0316587_10306191	F055469	MLKRTVIILAAAAFFWGAVPTQTAQARDDMWDLMNPSWWADKIFDNDDDDWWHYRHHAYTPYWGGPYVQRPRVIVIQPPETVAQNPETRAPE
Ga0316587_1032272	Ga0316587_10322721	F077370	LMNRNTQRKEQRNRRLNRKRVLKNNAHQLAIPKPMSLLGATIDRAIDILVDIHAVNSIGTPFYSFSTNQGAPTMTTNITDSMILQFPEYSELARIYGLCKLKKIQLGFTRSSNYVGGGTTILQNTPSLFLQASTIPYTSGSITLQRAIAQADNSVEIDLQTYEPKAFNIMLPPHVVSNNRAQNQTFVFGSQTWISTKLNNIQNFPDLFLNLGSLATPSFDSQASNNSFLIGQIHGRMQLSFAGPIVG
Ga0316587_1033642	Ga0316587_10336421	F035541	VKRLALIFTLAILASLIAIPAAFAGNTSFGNTTSLNNIPITDTLEEGTFEWDAYARYAEDFPRGHRIATRVFGALFKNFEFGMSWGISRRAGPVELALKYKVLDEYGGRFPLSLAVGAEGITGNYDRTNMDPTYYGVIGIHDVHLGGWWDWYVGFANNPTGFDNEDNSLFGGFKYWFSDCVQVNADYMGYSDNEEYIITGGLNYDWMNHIGFSGWVERDSVTEDNVFVLELQVQADMRDLTAEVSDPE
Ga0316587_1036118	Ga0316587_10361181	F035541	VKRLALLFTLAILATFVIAPAVFAKANTTDLNNIPITDTLEQGTFEWDVTGRYNEDFPRGRRVGTRLFGSLFENFEFGMSWGVSRMAGPLEVALKYKVLDEYEGRFPVSLAVGAEGITGNYQRTGYDPTYYGVVGIHDVHLGGWWDWYVGFANNPTGYDDEDNSVFGGFKYWIDDNLQVNADYWGYSDNGEYLISGGLNYDWVNHLGVQGWVEQDSVNEDTVVVLQFVARADMRDLHAMVSDPE
Ga0316587_1036919	Ga0316587_10369191	F077370	NPNRQNRKKVLKNNSQQIAIPKPMSILGETINRAVDILIDVYAVKSGLGPGYYSFSTGVSIPVISSNLTDLMILQFTEYSELAQIYGLTKLKKIQLGFSRASNLIGASNNILVNTPSFFLQASTIPYPTGSANLQQKIAQSDNSIEVDLQTFAPRAWDIMLPPSMVSNNRANNQTFTFGSQVWVSTKLNSVQNYPDLFLNLGSLAIPTFDNSASAGAYLVGQVHGRMQLSFAGPIVS
Ga0316587_1037473	Ga0316587_10374731	F094910	VRKLISIGVILALLVTFMVPVVVGAQEECENPCDYEPPECGPLPPKTTKTLAGAAVWTYLGVQDIMGRAVCATTGQMACNLGGWSDELGVIAVDVSAQVLDGVAGLVEAAIGQFLPDFEELGASVADMLRGIAEALGGTTEA
Ga0316587_1041443	Ga0316587_10414431	F023352	MRPRHPHAAESGVGEHTARESEAPNSVPPGKSAWRTPTPQNRKK
Ga0316587_1042969	Ga0316587_10429691	F038530	MRPRAPLAAVSSVGKHTARESEAPNAVRMGKSAWRAPTPDAEKP
Ga0316587_1043994	Ga0316587_10439941	F001024	MRPITPLAVENGVGKLAAPKRRLMSAREREPGELPP
Ga0316587_1044137	Ga0316587_10441372	F000344	MRPRSAHAALSGVGEHPARESESAKWCAEGEERVANAH
Ga0316587_1044259	Ga0316587_10442592	F001024	MRPETPFAVENGVGKLAAHQRRLMPAWGRERGELP
Ga0316587_1048708	Ga0316587_10487082	F031503	MERQEMMELFKATADIQTPEGLAAYRAFAAALTTPILQKIELESIMRQLFAVERLGPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFTIDASADWKITYARDSRIDIPQRAAARAAKDLANYEEECGWRVIMPAATSAFSGKGLLGSRPAPIFEINPTGTGA
Ga0316587_1049846	Ga0316587_10498461	F000817	ELRWKVAVNRVLLEISRIIPGDWGKAESGWLAEPLPNRVERFGGGGKIHQFL
Ga0316587_1050497	Ga0316587_10504971	F081387	MGAEKHPTVGSSGESWSINESLNQRLAGMRDFLNHEGYDSCKVRPQVKIMILHLKRTPGQQRASSCGKTLTGERYSSLLGVKCS
Ga0316587_1050651	Ga0316587_10506511	F030135	LKDREELATLSSFTDIWHSTKAGRQFPDAILPGKEAIDLVAGPLN
Ga0316587_1051804	Ga0316587_10518042	F007847	LKRAEKPHSKSSDRKALDGPATRPITPLAVENGVGKP
Ga0316587_1052628	Ga0316587_10526282	F005632	FTAARHVLDGVFGAFEFSPWRAVAARVEDDSEKWNAGIGVGLGYGLRLHVAALNFESMGVGAAWYHKL
Ga0316587_1052964	Ga0316587_10529641	F074360	NTNTTINTFWLTMAAKNKKANNKVPRKQTTKPIRSKQPLFVAGERPLPNKVLPVTAVTDKNGVSKVKVPIPHADADYEDGRTVGWVVQARFVVKDKFMFVSDTSSSATATIKVPATHRDANIELRVMGEPEEKTPVIFQLTPYFVQEMAFGLGGHHDL
Ga0316587_1053766	Ga0316587_10537661	F030135	EEFATLSSFTDIRRTAFTGCQFPDAILPGKEAVDLVAGPLGRLPGQDIE
Ga0316587_1055827	Ga0316587_10558272	F043157	VVGDKLMGILDERFRGCICLNIYDRVDSMRVLGELIMTNRAKSLERRIR
Ga0316587_1056201	Ga0316587_10562011	F005366	MYPLTLQAAIMRHMLNLARQLASGDLLESREKLEEYPLCGDPAVFDEIMRFRAVQSRMWGNKVDDTINDPWRWSAYISHCAVRWMRDPHKWTREDTDEFYDAMIETAAICAAAAESITRQRKEN
Ga0316587_1056604	Ga0316587_10566041	F052615	VARGQRTANSGGRPPAKRARREIEITGVSCLGPQAGDANVRPSGLKSLTQQSGDREAPDGPATRPTTPLAVENSVGK
Ga0316587_1057341	Ga0316587_10573411	F077370	SILGKTNDRAIDILVNIFAVNSLGTPFYSFSSSAGTPQISSNLTDLMILQFTEYSELAQIYGLVKLKKIQLGFTRSSNYIGGGTSILQNTPSIFLQASTIPYSTGSVVLQRAIAQSDNSIEIDLQTYDPKSYDILLPPHIVSNNRANNQTFAFGSQTWISTRLNNVQNFPDLFLNLGSLATPTFDSSTSGNSVLIGQIHGRMQLSFAGPIVG
Ga0316587_1059597	Ga0316587_10595972	F089490	MYHLMKSEKITLDHLVSGLMSSYRQSEIGHFQKFRTALGACEVANNKGRSRYYVLNESGQEYYDGTWID
Ga0316587_1061302	Ga0316587_10613021	F003269	VVKTWIERRRRVLAWFANRWRNHQFKRAEKPHSKFSVRKALDGPATRPITPLAVENSVGKLAASEAPNASTGKRAW
Ga0316587_1061731	Ga0316587_10617311	F035541	VKRLALIFTLAILASFIIVPAASADVHHGTTGLNIIPITDTLEPGTLQWDVWARYNEDFPRGRRVHNRLYGSLFEDFEFGMYWGISRKAGPLELALKYKILDEYDGNFPVSLAVGAEGITGNYDRTGMDPTLYGVLGIHDVRLGGWWDWYVGVAHNPMGYDDEDNSVFGGFKFWVNDDWQVNGDYWGYSDNEEYVLAGG
Ga0316587_1064456	Ga0316587_10644561	F025922	MNAISLSCSVSSFVVSIGMAATTTFTSEDIFELGHLDVIDVVDDVPAVAVTLNTNDFGDVRTLAILAQVPPAKAEMSASADSTSGNLVSGSTYLHGVSMADFAVTCGNLTGITMWAPVQAECDLGTLANNIDQTLFLDEVY
Ga0316587_1065883	Ga0316587_10658832	F001346	VAGPMKTSRNAGDGKNVTAGLRRKSSLRVKRRDPWHRANAPPKAVADPALSGQDADKQLQTCLGLVRKPVSQPPAQAS
Ga0316587_1067028	Ga0316587_10670281	F089490	MTDGPDRASHSSDKKLSMYRLMKSEKFTLDYLTSGLVSFYRQRQIKCFGRLRAALGACEVANNGGGSGQEYHGGTWID
Ga0316587_1067291	Ga0316587_10672911	F077370	LGETIDRAIDVLIDIYAVNSTLGTPFYSFSNSQGAPNMSVNITDLMILQFTEYADLARIYGLTKLKKIQLGFTRSSNFIGGGSNLLQNTPSFFLQASTIPYPAGSVNLQRSVAQADNAVEVDLQTFDPKAFNIMLPPHVVSNNRSTNQTFTFGSQTWISTKLNNVQNFPDLFLNLGSLATPTFDSQAPGSSFLIGQIHGRMQLSFAGPIVA
Ga0316587_1070688	Ga0316587_10706881	F025922	MARNRIIYASQSVWANGEVLYRVQSLGSTTAFTSEDIFELGHLDIIDVVDDVPSVAVTLNTNDFGDVITMATLAQVAPAKIGMDATATSSNANLVVVSGTNLTETSTYLHGASLADFAIVCGNLPGVTLWAPVQDECSMGTLSNNIDQTLLLDELYVNSLEFSYTTGANATENYGAETDNKTWLLNDGRFVNWDAYTIDGTDVSNGYVDLTL
Ga0316587_1073999	Ga0316587_10739991	F006508	VALANASSKAVADQCQAVKTRSRNRRRVLTWFASRWRNHQPKRAEKPH
Ga0316587_1074666	Ga0316587_10746661	F089490	MYRLMKSEKFTLDHPISGLTSSYRQTEMGHFEQFVAAHGACEVANYKGNSRYYVLNESGQ
Ga0316587_1076898	Ga0316587_10768982	F089490	MYRLMKSEKFTLDHLTSGLVSFYRQTQVKCFVRLHAALGACEVANNGGGSRYYLLNECGQEYYG
Ga0316587_1081840	Ga0316587_10818401	F073586	TTASGQVVGMGWTSQEVTTSTWDGLWQALIFKARNPEKFKMDVSDVVVADRPGYLARSMTINSSGAKVQEHIYASERKGEIIYRVVDPVTKRETDDERVIAVKESPLRMEFFHRHVSDGYRSFWQAPLDSVKQMVQELVDYAAQTEGKGGVVGLGIRSEEIKGVSHDSLWRSMMESIREPARFFACSNVSIKECKGFMQRTIT
Ga0316587_1086963	Ga0316587_10869631	F000237	LYLIQLHVLFCHESXDSDSGENTYEDKSGSYISXFYDAFLKEIQDAXYXTTFVFIYFXLHHFNAHTLNYFFFERXNISELRDIRFYNVAPHXYFRPLMGVLVITPTHYEGLMXLGLFFILLTFLPIVYNFYNNFNKHVPTIPMQNSMLQTFLFILFLMSLFCTASMLPCGRYYYEPEGGYTGNTXVKFSLQYIYLYM
Ga0316587_1088934	Ga0316587_10889341	F025922	MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDLRTLATLAQLTAAKKAMDASAASDTGNLVVVSGTNLAETSTFLHGVALADFAIVCGNLPGVTIWAPVQDECSLGTLANNIDQTLFLDEVYINSLEFGYTTGANATENYG
Ga0316587_1089457	Ga0316587_10894571	F081897	RGWEFAKLSFPNRHSARSFQEAAGFPTPFSTASGVFGLVAGPSGALRRPDFE
Ga0316587_1092893	Ga0316587_10928932	F000344	MRPRSAHAALSGVGEHPARECESAKWSAEGEERVANAH
Ga0316587_1103119	Ga0316587_11031191	F006782	VILCLFALFAIAFSYPVISDNFVSKNTVSRTFRNETHTHQETVYEWFSGRQRRIDTTAQGSTTITVYQFAANHTEYIDIDGNHCMRRDFYEPWMPFFDWLKDSRANGTCSSNGKSGSLWVDTGRNGMDFTLCANGNTPIAFDVIDRHNQVIDVVVFNTFTAGVPAPSNFQMPARCYSRPISN
Ga0316587_1103521	Ga0316587_11035211	F105196	MQIIHRCRDPYGPLSNSRKALLQQLLETPDQCLWERARGLIVRAIPIVTLETAVRSVRKNGDTRRVPDPFTLYRALRYAVDCDTGGAVAARGGISS
Ga0316587_1105992	Ga0316587_11059921	F090440	GNEISGLKLATDLRLKRIYHCRITDVGEGHDRRIIIHKSIGG
Ga0316587_1106291	Ga0316587_11062911	F093160	DENNYCGEREELKMWLWPDRSACHGIDDEAEEADKMAVDPDGNVYIIDDRYRVARIDGATDEVVQVIDIPGYDCEATVPDDSPVVLRNTANNIAYMPLGQGRLYVTSEQDTVTLIEWQTRGRRTLTTLTTLTIPGAVELDAITTDPRLNQVYITDESLALLWILKGACANGTGRACR
Ga0316587_1118151	Ga0316587_11181511	F008512	QLLLCISTMQAALAGLIENKDQGPPKEKRRKADKKSASIGKQHGNSAGSVKNFRAPAMLKTAPLDCEIKRNLREKRRDPWPRANAPSKAVADPELVVKTRQ
Ga0316587_1118487	Ga0316587_11184871	F067247	VRKLLSIGIILALLVTFIVPVAVAAQDDCCEWTPPDSVPLPDRSTKTLAGATMWTLLGVTDIMGKAVCATTGQMACNLGGWSDELGVIGVDITVAALKGIGPLIEGVIGQFLPDFADLAGGVVDLLDGIADALAGAAEA
Ga0316587_1121143	Ga0316587_11211431	F093160	ACHGIDDEAEEADKMTVDPNGNVYIIDDRYRVAKINGNTDKVVDVLEIPGYDCEATVPDDTPVVFRNTANNIAYMALGRGKLYVVSEQNTVSLIKWNSKKRELQIKATLTIPGAEELDAIATNWTLNQVYITDESLASLWILKGACANGVGVHCTP
Ga0316587_1126349	Ga0316587_11263491	F003108	FFIALIFIAVVFAQTPQKPTWPNAFSATLEIHRGQFPRPDFWRQFYDYTHQVDRFDGLVDFRGDRFFASIYLLHNQGRQYNVLYQFNEVMCFYHPINSTVPKPNFSNWQYGGKALVQYYTADHWFFRDDARGEFMQYFDRSDNRQPLRFDFDIRRNGTELSEQWLFH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033529: Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences