NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020285

3300020285: Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555972-ERR599034)



Overview

Basic Information
IMG/M Taxon OID3300020285 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117946 | Gp0117222 | Ga0211602
Sample NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555972-ERR599034)
Sequencing StatusPermanent Draft
Sequencing CenterCEA Genoscope
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size134476821
Sequencing Scaffolds44
Novel Protein Genes56
Associated Families56

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available33
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED2641

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)N/ADepth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F000659Metagenome / Metatranscriptome952Y
F001334Metagenome / Metatranscriptome720Y
F001625Metagenome / Metatranscriptome661Y
F002348Metagenome / Metatranscriptome568Y
F003285Metagenome / Metatranscriptome496Y
F005684Metagenome / Metatranscriptome393Y
F007121Metagenome / Metatranscriptome357Y
F010197Metagenome307Y
F011446Metagenome / Metatranscriptome291Y
F011620Metagenome / Metatranscriptome289Y
F012162Metagenome / Metatranscriptome283Y
F012921Metagenome / Metatranscriptome276Y
F013570Metagenome / Metatranscriptome270N
F013815Metagenome / Metatranscriptome268Y
F014192Metagenome265Y
F015481Metagenome254Y
F015611Metagenome / Metatranscriptome253Y
F016878Metagenome244Y
F019388Metagenome / Metatranscriptome230N
F020787Metagenome / Metatranscriptome222N
F021319Metagenome219N
F022429Metagenome / Metatranscriptome214Y
F024813Metagenome204Y
F025588Metagenome / Metatranscriptome201N
F029555Metagenome188Y
F030124Metagenome186Y
F032684Metagenome / Metatranscriptome179Y
F034700Metagenome174Y
F035802Metagenome171Y
F041257Metagenome / Metatranscriptome160N
F045159Metagenome153Y
F049215Metagenome / Metatranscriptome147N
F049699Metagenome / Metatranscriptome146N
F062832Metagenome / Metatranscriptome130N
F062835Metagenome130Y
F064804Metagenome128Y
F066858Metagenome / Metatranscriptome126N
F071317Metagenome / Metatranscriptome122N
F072431Metagenome / Metatranscriptome121Y
F072736Metagenome / Metatranscriptome121Y
F074005Metagenome / Metatranscriptome120N
F075314Metagenome119Y
F080484Metagenome115N
F080654Metagenome / Metatranscriptome115N
F082824Metagenome113Y
F084353Metagenome / Metatranscriptome112N
F086145Metagenome / Metatranscriptome111N
F089050Metagenome / Metatranscriptome109Y
F092197Metagenome / Metatranscriptome107Y
F094002Metagenome106Y
F094377Metagenome106Y
F097500Metagenome / Metatranscriptome104N
F098016Metagenome / Metatranscriptome104N
F099438Metagenome / Metatranscriptome103N
F105357Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0211602_1000738All Organisms → cellular organisms → Bacteria8747Open in IMG/M
Ga0211602_1001355All Organisms → cellular organisms → Bacteria5971Open in IMG/M
Ga0211602_1003288All Organisms → cellular organisms → Bacteria → Proteobacteria3194Open in IMG/M
Ga0211602_1006731Not Available2019Open in IMG/M
Ga0211602_1006782All Organisms → cellular organisms → Bacteria2010Open in IMG/M
Ga0211602_1006923All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1982Open in IMG/M
Ga0211602_1007671Not Available1862Open in IMG/M
Ga0211602_1009107Not Available1669Open in IMG/M
Ga0211602_1009750Not Available1599Open in IMG/M
Ga0211602_1017469Not Available1119Open in IMG/M
Ga0211602_1022119All Organisms → cellular organisms → Bacteria963Open in IMG/M
Ga0211602_1025430All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter877Open in IMG/M
Ga0211602_1025627Not Available873Open in IMG/M
Ga0211602_1027181Not Available841Open in IMG/M
Ga0211602_1027276All Organisms → cellular organisms → Bacteria839Open in IMG/M
Ga0211602_1027580Not Available833Open in IMG/M
Ga0211602_1028301Not Available818Open in IMG/M
Ga0211602_1028346Not Available817Open in IMG/M
Ga0211602_1029912Not Available788Open in IMG/M
Ga0211602_1030063Not Available785Open in IMG/M
Ga0211602_1032551Not Available745Open in IMG/M
Ga0211602_1033753Not Available727Open in IMG/M
Ga0211602_1035170Not Available707Open in IMG/M
Ga0211602_1035223Not Available706Open in IMG/M
Ga0211602_1037922All Organisms → cellular organisms → Archaea → Euryarchaeota672Open in IMG/M
Ga0211602_1039093Not Available659Open in IMG/M
Ga0211602_1040288Not Available645Open in IMG/M
Ga0211602_1040691Not Available641Open in IMG/M
Ga0211602_1045191All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria597Open in IMG/M
Ga0211602_1046649Not Available585Open in IMG/M
Ga0211602_1047170Not Available581Open in IMG/M
Ga0211602_1047199Not Available581Open in IMG/M
Ga0211602_1047472Not Available579Open in IMG/M
Ga0211602_1047879Not Available576Open in IMG/M
Ga0211602_1048442Not Available571Open in IMG/M
Ga0211602_1048755Not Available569Open in IMG/M
Ga0211602_1048814Not Available568Open in IMG/M
Ga0211602_1053369Not Available533Open in IMG/M
Ga0211602_1053734Not Available530Open in IMG/M
Ga0211602_1056284Not Available513Open in IMG/M
Ga0211602_1056996Not Available508Open in IMG/M
Ga0211602_1057083Not Available507Open in IMG/M
Ga0211602_1057243Not Available506Open in IMG/M
Ga0211602_1057354All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0211602_1000738Ga0211602_10007386F099438MKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNQEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA
Ga0211602_1001355Ga0211602_10013554F071317MLKKITAVGLITLFAGMTAAPFIPLDDCNMPCCAAIATSCCEMDREITCATMSDCGSSVFMLIVSGPFHKSELKSSDIFSQRFVTDLGIPKIETNYIACLGNFDPGPIASLNLPLLI
Ga0211602_1003288Ga0211602_10032883F002348METKETWMKYGGWLLSLLTILAGVYFLWPRIHIALLGITLIYFGVRIFNFSTFDEYREKRMNLLQSLMS
Ga0211602_1003544Ga0211602_10035441F066858GFLSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSIVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTARVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG
Ga0211602_1006731Ga0211602_10067311F105357MDIDKVAVSTRLKRDEDRYLVLIDVDPTASTNDEFLKVFPKGYHGLFEFDNELDAKQCLIEVNKKLGLSKL
Ga0211602_1006782Ga0211602_10067822F097500MNRLEAVIEKEKGISYSQRDKDLFRSHILILIHQEQESKKFKRKLGLSLFLAVGTLSLLFSQINEIANDFTVGLSDAITGDMLTTIVFSYGLLFALLALLKKPDFIFN
Ga0211602_1006923Ga0211602_10069231F094002MLEVRIFYASGALECPLPRSPNTTTAIAINTPIAAPNADAAASAIVDMLKVNNIYYC
Ga0211602_1007671Ga0211602_10076711F098016LSQRPLSPSGLPDEASADERLAQVSDDLPEPRLVLPLDDEEPDAPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLQEPEDQLFLPEMPIGLPAELAEPVAAVFTNGASDAPLAEVPLPEPTSVSEIELVDADLDGWMASLESPSMFLDVPPVQVAMNDTVVRNV
Ga0211602_1009107Ga0211602_10091071F080654VIAEVISEETSESEPIGKTNLEERQDLWNKIQKFDTEASAMDYYDNGEWDLEKMRSDLKVLLEKDRFGR
Ga0211602_1009750Ga0211602_10097502F011446METMILGWASSQSWWGIATTIIVIANGITMTLRDKYAENIPILGKIWPILNWLSLNIANNKNEDK
Ga0211602_1009750Ga0211602_10097503F025588MKTYDKFKKELTEDGMLHGEYGTENPSTTIHYGPNDPEIVRTASNTMTVPKYRLSEDGKGCNHTCAHWRDSSYCAEYYFKCDSTYTCDSWKDSGI
Ga0211602_1014769Ga0211602_10147691F020787MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVIFNFEVNAGFDVEKGEINMEELRSYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS
Ga0211602_1017469Ga0211602_10174693F021319KIRPPPIPNRLDIIPAKKLAPAEKTSKRRDISTDFSSIFLLRNMYDAEDMRTSANKTLKISDDKSEEMNAPNMVPGTAIKPSFQPNENSTRFCLAYATVDPTELLNTANKLLLTASVGENPMNVNTGTIIIPPPKPIIDPNIPAINPKGINQISSNILNRYQFKFGFISNVKFINKAGSY
Ga0211602_1022119Ga0211602_10221192F012162MLLTEEQTKYYLNDMIQHYREKESNTTGNLSWQRSEAEYRRKTFEDMRIVLFGDDDNGHRNKSA
Ga0211602_1025430Ga0211602_10254303F010197HELKAFTIKHDFAQHMKKILSRQDGIFFLLKKFDE
Ga0211602_1025627Ga0211602_10256272F000659MLRFKQYLKEVNSKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDIAARGEI
Ga0211602_1025627Ga0211602_10256273F016878MKSFNGYLKETFQDWKSGDAPAWTESLSTMLFDLPRAGFKDIHIPLSPSIMSRIWPKSVRSKAFHLTDFDGLKKLKGMQKGKRSISAFYNIDDIMIQSGIKTEGGYIIELEGDVLAASPDDISSQPDKSGRRWITVSSLMNPSTAADPGL
Ga0211602_1027181Ga0211602_10271811F062832DNDVGADITVPAQPYPQGDQAGLDDDRANDNAPAGDSAPSMQEKPLHKSEKLVEKSQHTFTTETPRPGAAVEKAGQGQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTPEEVAGF
Ga0211602_1027276Ga0211602_10272761F003285MPDQESIHHLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKLLHSRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAIAWLLTNIIPKFLSN
Ga0211602_1027276Ga0211602_10272762F001334NADDSIEQVMSGEWIAKSRTTWKATDDEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAFFCKQFITEIRPAELSYARSRIYPSSSN
Ga0211602_1027580Ga0211602_10275802F029555MSMEYKGGYRTEVPRYELIPGERIDYEKYIETRDLTDLAGRIERGEPHEVNPNYGGQGFTYLYPETRDLGRLKVTPVEDTWKLEWENTYNG
Ga0211602_1028301Ga0211602_10283012F072431MSMTPKQLHDYLLNLKNKNSLDPNIEEYKRTIRKELYHYRSDQPSPPMDSLVPYPSDGKDVVFYSFMDAPNKPKIAAHEMKRLRLSWSSLRKHNTDIEVRFCYDGNDLAWTKLCEEFDITMYPFHESFTGKEPNAWCIHRWYNLALWKDESLNVLYLDADTYINGDIQLVFDIYKRDPVYGREELGFRHDPNLGVCGEDPRFYLDLIDASILAQGGKTEVQKYCLGVILLNHSVHKFFTPEVLK
Ga0211602_1028346Ga0211602_10283461F041257MQEFKPNYRPLGSEEDDVVDPRSEQPDGPFDHERFKTLTVLAHAAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSKALMAWVWWDPSSEASCVDRFYPWEYGKERTSRMVAIASGLLPEPIDVTSSGDIPPSPPRTQ
Ga0211602_1029912Ga0211602_10299122F022429MGIGFSAIWNGPSFLERKPSALRMKARDEAGKKKREKSGKLKMREHIHHNWDKDLWD
Ga0211602_1030063Ga0211602_10300631F089050MVELNHNVVSFNSDTLIKGGHGVVVSVFVTKVGSGS
Ga0211602_1030063Ga0211602_10300632F001625MALTISTSDWTSANVRKTLSFNAALVSKLRIYSIKVTFGASDAYATNGVSADLKEGRISTLVAVTPTFTDSKLVVQYDKTNEKIKCFTGSGNGNILAEVPNASALVNSKIFEFLVIGY
Ga0211602_1030063Ga0211602_10300633F064804MVQLYHNEKLAKARDLVIIFLFGSIVIETITGIELLGAWWK
Ga0211602_1032551Ga0211602_10325511F086145CADYWGDIFYTQATNRGYLKLLAFFLIWQKKTTVSLKIPIIVRV
Ga0211602_1033753Ga0211602_10337531F082824MKKKVSERTLTTKQAVTQMNHYWLDLDHLASDDTKKKSMDMRFGIKDIKLDRGTKNFQPSNL
Ga0211602_1033753Ga0211602_10337532F094377FSKIEKDLNTLIANLVKKHIPKDKEIQQTKHFGKDAGAAFDVWSNMKRHLKGDGQKLRLVIKDYFDGVEKIIKKHKKWLSSTFYGYAKSKRSTDNSWDEQLVNNIKVKTVHLIQPTQLKIDTANPDRTHPIDSFEFAKEKAEKLFDTVKVWDVAIDLEIYTREVVKKEQPPRNIAY
Ga0211602_1035170Ga0211602_10351702F035802MVDIASNILKDIFSKKLTKAKDGIAKSLKTKSLKAIEDYKNSFKFELPGTEPKTTPTPETPKVDT
Ga0211602_1035191Ga0211602_10351912F072736MGSIDMEGRAIEFKVKAGSRITLQLTVADSSGNAKSLANTVTYATGKWKVWKPGGTLIVNGDLTFTNRAGGIVSYALLEADT
Ga0211602_1035223Ga0211602_10352231F013815MYFVQYEKTLPPWYSGMDKIEAETSEDAVKEFYKRHDSFEDRVRSVREVQDTYQK
Ga0211602_1035223Ga0211602_10352232F012921MADDFDFGFSAVSTDEFKKTQTDTETTPSASVSSDEFDELSKKIDSISSLIHSLGDREDTSLFDETGEIVAANGEKISRVEDKIDKILAMESSQVASALEEQ
Ga0211602_1037922Ga0211602_10379221F005684MRGTSTRGCEGAGGLLTVYDTEESPLSAMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPRRSKSKQVRKASTGPGRTHS
Ga0211602_1039093Ga0211602_10390931F045159MAEFSALLTAKAEWKPHQIAKAGDISALAQGASNLAETVKSTLKLASAGMEVVKLMAQLQNINPLLMALDALADEVIKQIQDLKEAGYYYLYVDPYFDKNVSPTQKFDYGFEQLRDEGG
Ga0211602_1039093Ga0211602_10390932F075314MAEESRWKEAELRRDDIKKLLENTKKLAEMYSDLLAVKRTGWENVLKSKIKREEKEKQNG
Ga0211602_1040288Ga0211602_10402882F092197IRTDIKGEVNKQEDQIAAIDKRSRSESQETRTIIRNAEKNFGELEMGMLSTIRDLISDTSKRWDDKLTKVDTQIENLEKKIDKKITKALENPLAAMSKSNATKKKFPWKVQR
Ga0211602_1040691Ga0211602_10406912F049699MSLNLTKQRLASAEARIDKFIDQNILIWATELILLPGQTNIATSISPKASTGLSLEKTGFMKIDLVWNFKGPEGQPLDFYLEYGTKPHRIRAKGKDAGGADMLHWKGPSGGFVIGKDHFAKEVRHPGTQPKGLVQ
Ga0211602_1045191Ga0211602_10451912F014192FLYLDCVLFLTSKIKNNKIENVKKFINVKLYGAKPSIVIAPSKKGAKNITKNLLLSKAIKLKSLLLIN
Ga0211602_1046649Ga0211602_10466491F034700MAEELVDFGFSAVTADEYERDNTDGENTGSGGSASPEALASMDAKIEQIMAVLSSKSDAPPDDFGFSQE
Ga0211602_1047170Ga0211602_10471701F007121DTLQEPTLDKLIDWVPEEVPRTVSFYFDTDEDGKFDIKIAYSLIEAYACKNNCVRRIIDNGDHWILPAPGVNYYVIKKWIVYRYVDDEDWRGEYKTQQWIFKYPYNDDWLEHKFYPLWPEHMK
Ga0211602_1047199Ga0211602_10471991F080484LYFGCGMALQLAVGLSDHTINAHKDPNANNILDSFAGIFIALHLFDVYTQTKKYNRNLSMSIFGQKTPPPTLGTIFPLKTNYKHYFNFFGFPNHRTGIGMFGYSITKRTKKNNEYYMGIGTIIINLSITAGWKYYFKKSNADDYYLAMSLVGSTLEIDDRYDETKKVSKDFIAGNFSAGYEKRLSKNMYLNME
Ga0211602_1047472Ga0211602_10474722F000615KKKVNDIVSGIERPENIMCRIRLFFECSDGSMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV
Ga0211602_1047879Ga0211602_10478791F030124DPGLNGKAKLRGIEDDIKTLLEDILEKNGEDAKDMMFGITEIGLMWSGLGKKTGGKEKSIIIKDYIDGMEKIMKKYSKPLRSVLTDYTNKKTLEPDPDSGDTAMWDELVVNNFTIQKIHVSPEFSPDFAPLVKGDGDRMYTFGDRDADIEGFPFELYYEVGDMIDYINRTLR
Ga0211602_1048442Ga0211602_10484422F032684MLLLCTLRILALIDKFKSNSFLFKAEEVMFLPLGIITKNTLKNIMHPKIRPTDKKANLDPKIFVKQNEITAPIMSNTTGKIILLFINLDLQIRS
Ga0211602_1048755Ga0211602_10487552F024813NKIPKNIFVLIIAKMSNAFESFNAKICVMVIINTRKITSASIENKPEAEVIIKNQNENPAVTASALNLGEDNSILNWINECYKTALC
Ga0211602_1048814Ga0211602_10488141F084353MDWKRKKTIVPRCDCSIHDVISGIVEYLIITPIFAIGYLTVTIPWMLFVIGLDADQFANFVWQSVMVDLVVAYPLAKLVM
Ga0211602_1053369Ga0211602_10533692F074005MVQIRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPWDK
Ga0211602_1053734Ga0211602_10537341F049215CTEPMKYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSQDWFWLYDSGDRVKIYNNSSFNWQFEFPEDFDSLYVHARFYYTKDLIIELVVADTAIRMDSDKTLMFWNCGDTTVVEYPFPACLTAVDSL
Ga0211602_1056284Ga0211602_10562842F015481MDEVEKRFGCDECGHTFCMECEEDMIPKFCPFCGAPVYDRDAEQGEWSGEDVYPFGD
Ga0211602_1056996Ga0211602_10569961F011620MIDKIIQVVLKFFGKEKPEPPTEENNESLEALERIEALD
Ga0211602_1056996Ga0211602_10569962F019388MRTEQNPYLVETKNGQILKFSKIDADNEAVIKQLDGDDVEVYHDGKLQYKLHGIEQGKLF
Ga0211602_1057083Ga0211602_10570832F015611METTYAEFMEAKVKSWKDMKDRNVLKAAEKHKKRMKSGNVLGYTVAHQEFTIFRNEKEWNDSVK
Ga0211602_1057243Ga0211602_10572431F062835MAIKSFEIDIDGKKEIIEYEDDLLFGELEAIVNISVDLSDVTKPKVDLPKYRMNILTKVLRKAPFPIDDAASIRNLKAKVAKQIISEVMKDYPLMRFLEDWMVTFVGTQEATSSPTESTTSLPKVSAGTNTK
Ga0211602_1057354Ga0211602_10573542F013570MELEKIKKKREELMTNYNSLIDKRIELEKQLEVTNTDILTMRGAILLSNEFIEEEEKPEPKPLFPEKEVVVNDLDKEKDGGQKNK

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