NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022043

3300022043: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (v3)



Overview

Basic Information
IMG/M Taxon OID3300022043 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114433 | Gp0123715 | Ga0196909
Sample NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (v3)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6848607
Sequencing Scaffolds27
Novel Protein Genes31
Associated Families30

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
Not Available20
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001153Metagenome / Metatranscriptome764Y
F004814Metagenome / Metatranscriptome423Y
F005704Metagenome / Metatranscriptome392Y
F007611Metagenome / Metatranscriptome348Y
F008427Metagenome / Metatranscriptome333Y
F010173Metagenome / Metatranscriptome307Y
F014154Metagenome / Metatranscriptome265Y
F015345Metagenome / Metatranscriptome255Y
F020893Metagenome221Y
F021019Metagenome / Metatranscriptome221Y
F025178Metagenome / Metatranscriptome203Y
F026894Metagenome / Metatranscriptome196N
F036242Metagenome / Metatranscriptome170N
F037992Metagenome167Y
F039092Metagenome164Y
F039114Metagenome / Metatranscriptome164Y
F040084Metagenome162N
F040600Metagenome161Y
F041779Metagenome / Metatranscriptome159N
F043148Metagenome / Metatranscriptome157Y
F043442Metagenome156Y
F044547Metagenome154Y
F049039Metagenome / Metatranscriptome147Y
F059943Metagenome133N
F066808Metagenome / Metatranscriptome126N
F067706Metagenome125Y
F077237Metagenome117N
F090483Metagenome108N
F093493Metagenome / Metatranscriptome106N
F099334Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0196909_100161All Organisms → Viruses → Predicted Viral1744Open in IMG/M
Ga0196909_100267All Organisms → Viruses → Predicted Viral1337Open in IMG/M
Ga0196909_100472Not Available1030Open in IMG/M
Ga0196909_100504Not Available1004Open in IMG/M
Ga0196909_100537Not Available989Open in IMG/M
Ga0196909_100716Not Available860Open in IMG/M
Ga0196909_100796Not Available819Open in IMG/M
Ga0196909_100841Not Available797Open in IMG/M
Ga0196909_100877Not Available782Open in IMG/M
Ga0196909_100892Not Available777Open in IMG/M
Ga0196909_100954Not Available752Open in IMG/M
Ga0196909_101100All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203714Open in IMG/M
Ga0196909_101109All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.712Open in IMG/M
Ga0196909_101332Not Available654Open in IMG/M
Ga0196909_101382Not Available645Open in IMG/M
Ga0196909_101406Not Available639Open in IMG/M
Ga0196909_101454Not Available630Open in IMG/M
Ga0196909_101571All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium606Open in IMG/M
Ga0196909_101607Not Available601Open in IMG/M
Ga0196909_101811Not Available570Open in IMG/M
Ga0196909_101838Not Available566Open in IMG/M
Ga0196909_101984All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage550Open in IMG/M
Ga0196909_101996Not Available549Open in IMG/M
Ga0196909_102171Not Available531Open in IMG/M
Ga0196909_102246Not Available524Open in IMG/M
Ga0196909_102354All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium513Open in IMG/M
Ga0196909_102356Not Available513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0196909_100161Ga0196909_1001611F044547SFENVLMALTESKFDGNIPDRNTKSEVNTLLKIIQTIGEISNKIVISEEQKFNKQGDIESIFRQIKAQKSGD
Ga0196909_100267Ga0196909_1002671F007611MKRKTITVLDYETSRVYQYKVKINVHSEHFIVFKGHKLSSVEWMEHQIGNIITN
Ga0196909_100267Ga0196909_1002674F039092MVTLPSLKTYTINTRNNMTFTFENIGKTYSVDSEDRVIVTHSHDSIISVGGEYFKNKYTGEWLSELEVEQIMCSRYEEDESNKYY
Ga0196909_100472Ga0196909_1004721F015345LTTVDLFAIKERIVEILKADTTNLYSSTPSDKTKFRKIEAGAPSPKAIQEPPLPRCWVTSDETVALVKPLAVIQSNISKGEEYDIRIKILFVAEAKDGPKTEEDIDDFTKSIIEQMEANYDLRTPGGLESTRVAEASQVLAIRDLPAMFKGDRVKGRAITFQVIVRA
Ga0196909_100504Ga0196909_1005041F043442KYSYANITKFRDKFDKIFVVSGTKTEPDRYYELLKKHRELYDYAIQYDVFYDMNKTLEYYRKEREMGIDWTLPVLQGNYLNHLSQLRLEPDTYVCLGEIHGREETEDQIRKLPANLKYHGLAKGRYITQTKMFESLDTSGWISAAMSKKCEVWNKNSTNFMFFGEKGKSMIPMLNHACEIHKEYLELINLNKQDIIDGDYYALMKAPFALLYMPMCKQLNILEQNFNI
Ga0196909_100504Ga0196909_1005042F014154MSGDIFKIKPLDDNASKVVVDGHKTVSPFNSAKHLKTANIPALCDQCVYRSIDEGGNGKCPKYEKGAMCAIRKDFVELINQLDTRNPEHVKTMLDM
Ga0196909_100537Ga0196909_1005371F036242MIPIEVLTMAGGATMGGLFKMIDKAQEAKAKQQEQMINMMKAKTEEADAASERATKAADAAAARVGNDPFAKMTRRIFVLAMLAMGAWAMMGGLTGLDIYVPVERTTGFNFLGLFDNTKTQTEYIKLENALVHFEWLKISILAAGSF
Ga0196909_100716Ga0196909_1007164F004814MIRGDSGEYDLLTKWANFDCEGNYSCEIGVREGLGSKIIMDNIKNNFIHIGVD
Ga0196909_100796Ga0196909_1007963F037992MKSIVAFVLGATLVGVTSGVIAQDATTYNEENGYWGSPCPVVYGINKPCDEEVITFNEENGYWS
Ga0196909_100841Ga0196909_1008412F077237LGGSMEEENNGLRAILIDPFKEKVRVAYPVRDDYMAELKKWMEISCIDIVTLDKNNMLVVDDDGLLRNPNRYFHWAPTNYNFAGKAVILGYDEAGETVDCTYVASVVEDQLVKWIPEGYREEPFMQFIPIS
Ga0196909_100877Ga0196909_1008771F001153SEVVAKKIREGIRNGVSMKDIMGSIQKYQNAPRSTNTLYKIYGQMISEERAEIIGQVGAVVVQQALDGDFKAAEFYLRSKGGWSPTQTINEVEQSEDPDLDEGAINTLMSLLGKNEDNS
Ga0196909_100892Ga0196909_1008921F036242MTMAGGATLGGIFKMIDKAQEAKKAQNEMMMNMMKAKTEEADAASERATKAADAAAARVGNDPFAKMTRRIFVLSMIGLGAWAMMGGLTGLDILVPVERTTGFNLLGLIDTTKTQTEFVRLENAIVAFEWLKISILAAGSFYLGKS
Ga0196909_100954Ga0196909_1009542F049039IDYFSRATARPSESHIDQINRYRVLLKKCYDIDAEFGCVIYISNKIEKDKRDIPVPLAFKLKPIEETLKDMIEKARTIKESMTDCTLPERTRCYLCDGMCPYASMCFEDNRKKWNEK
Ga0196909_101100Ga0196909_1011002F026894VAGVSRKKTGDSNRVKLTQDDLATARNFGIDINDEAALKRFAKEVKNFSTNT
Ga0196909_101109Ga0196909_1011091F043148MEKLDYIQTRLECLRYAIEFGTARDVVNPALLADKYYEWVMQGSDKVRPVDNRKDDSPKAAQKPRSVR
Ga0196909_101332Ga0196909_1013321F066808MKTLNIYLRTTSGSKVDKLLSFGKGAEKHGIKVNYCNDNFFTPSDYSYIFAYKSDDVNSKSHILRQEVVDKKTDKQIFFLDSNVLGYYEKEKDIQNVYRRYPYRSIHSHEADFLPVDETSFKRTDQVKKELGLRIKDWRRTGDHILLCLNRGSGGFSSFGTGCYEWAREVIQRLR
Ga0196909_101382Ga0196909_1013821F025178MNIKSTTIELDKYQKHWTHTRPYGHDIVIFSEPNNKITIKCKWTDKVRDKNGRVYDKRR
Ga0196909_101406Ga0196909_1014062F090483PEAYRGKRSHRSLKSVVKQARKRGAIETEHAELKRIKAEKIAKYSAEFAEKGSFTYEENADKLYRNQMTFCTLMGVELDED
Ga0196909_101454Ga0196909_1014541F059943MNKIANFAELFPDWQEPNRGPGISYCVAPNARMFDYELLLAGERSLRGCIRAIDKKDAARILSNRHPNCSIVQIGSGRRIAPKSKKA
Ga0196909_101571Ga0196909_1015711F010173ILSRGQLQMIEDDPSKMETLARLMGAVNLDNLFRHMQNPNVNPTARIEFQKMLNKMGRLEPDSKSDGGGSGPQVVINITRAKDHSDGIIIEGSSKALEA
Ga0196909_101607Ga0196909_1016072F099334MLAKNRLTESFIIQGKLDKVSSVDTRLIKNHILSNFTLTNRYDNPQYWYMNNYVKVPY
Ga0196909_101811Ga0196909_1018111F039114MATKLDVNTGNTDLGKKIWDIHQNNEYTKVNNYKEGMCYNCFENNAVAALVLDICGDCAGKRGRETILVPIKQIYYGMCYFCGDYKFNLEQINGRLCTKCHRRCATHIKDYNKKGGQFGADPFWKSVKRRHGQDWKLIMNDPSQSYRR
Ga0196909_101838Ga0196909_1018382F067706MSRRYGQHQTEVQVDAEWATLDVVIHWTLDRDDYQDLVSIDKITVGEKDLHEGWNVDYFESIIWDEVLAGEDYLPTDHGD
Ga0196909_101984Ga0196909_1019841F093493KVDSMEKDIKELLELANKGKGGFWVTVGIASAIGTFLGFIGHNLFGK
Ga0196909_101996Ga0196909_1019962F041779ITLHLGRVMGDRKTIITVSLTTQAAEYLDFLAEKQTKGNRSRWVQTAILKAMQRNIGREAAHVAPESGRVHGEDGDKCNPLHRGGRCEICWGEE
Ga0196909_102063Ga0196909_1020631F021019AALKRPHLQITTVRFMRKYLVQIFTKYLQTSFEIESNKDINTIEELHPHIIDFLGKSDIKWEENDLQYTSTVNDFYITYEEVNNGSAKDGVVREENTVRV
Ga0196909_102171Ga0196909_1021711F040600MRTLEDFREETRRKEAYFWGLVRQSERREPTFCQLYECSRCGKLSHQKHERNCFDLKPLDISKEEKFRRMDDPHN
Ga0196909_102246Ga0196909_1022462F008427IGTASLGGVNLTTAGTYYNLATIRIKSGRPYAVIVPIDIAASAISNSDFQIELRLNATPSTAFSYTSYSDNVEYDLTGTTTITGGTVVGQAYLSGKGANNLQFARDGFNFAYQLGQTIAGSSDTLTLCAKGGSNGDDICGTLKWVDLT
Ga0196909_102354Ga0196909_1023542F005704MDNRLSLLGGARALLTTVVATTVTIDSRYAKSAEVKQQFCQARKQQLRDRIFELDLKNPKTPNDRALREYLQQQLRDGC
Ga0196909_102356Ga0196909_1023561F020893MPTEIYVALISAVAIVSAAVLPAVLIERARRENADDHAYVRKVLTRVERKIDNHLKDHENGTTRRNSAKAK
Ga0196909_102356Ga0196909_1023562F040084MALRDEIQPKLNKVAGLEKWLDDQPNGEEWYQIIYDLQYSSQSVATLLTKHGFACDHNV
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