Sample 3300022835

Basic Information
IMG/M Taxon OID	3300022835 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131983 \| Gp0256465 \| Ga0224537
Sample Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 10-14
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300022835 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0131983 | Gp0256465 | Ga0224537

Sample Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 10-14

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	66122830
Sequencing Scaffolds	35
Novel Protein Genes	36
Associated Families	36

Dataset Contents

Total Genome Size

66122830

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1
Not Available	22
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium HGW-Tenericutes-7	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium HGW-Tenericutes-7

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

Ecosystem Assignment (GOLD)
Name	Peatland Microbial Communities From Stordalen Mire, Sweden
Type	Environmental
Taxonomy	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Ecosystem Assignment (GOLD)

Name

Peatland Microbial Communities From Stordalen Mire, Sweden

Type

Environmental

Taxonomy

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → peatland → peat soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0468	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3533

Long. (^o)

19.0468

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000842	Metagenome / Metatranscriptome	865	Y
F001490	Metagenome / Metatranscriptome	685	Y
F002448	Metagenome / Metatranscriptome	558	Y
F007838	Metagenome / Metatranscriptome	344	Y
F008043	Metagenome / Metatranscriptome	340	Y
F010024	Metagenome / Metatranscriptome	309	Y
F012538	Metagenome	280	Y
F014092	Metagenome / Metatranscriptome	266	Y
F014212	Metagenome	265	Y
F015142	Metagenome	257	Y
F022789	Metagenome	213	Y
F026911	Metagenome / Metatranscriptome	196	Y
F032618	Metagenome / Metatranscriptome	179	Y
F038641	Metagenome / Metatranscriptome	165	Y
F042098	Metagenome	159	Y
F054973	Metagenome	139	Y
F056356	Metagenome	137	Y
F058083	Metagenome	135	Y
F065874	Metagenome / Metatranscriptome	127	Y
F068031	Metagenome / Metatranscriptome	125	Y
F079498	Metagenome / Metatranscriptome	115	N
F083425	Metagenome	113	N
F087858	Metagenome / Metatranscriptome	110	Y
F091193	Metagenome	107	N
F093096	Metagenome	106	Y
F095885	Metagenome / Metatranscriptome	105	Y
F096254	Metagenome	105	N
F096438	Metagenome / Metatranscriptome	104	Y
F096520	Metagenome / Metatranscriptome	104	Y
F098448	Metagenome	103	Y
F099181	Metagenome / Metatranscriptome	103	Y
F100480	Metagenome	102	N
F101039	Metagenome / Metatranscriptome	102	Y
F102306	Metagenome / Metatranscriptome	101	Y
F102391	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0224537_1001132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1515	Open in IMG/M
Ga0224537_1001608	Not Available	1386	Open in IMG/M
Ga0224537_1001809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium HGW-Tenericutes-7	1343	Open in IMG/M
Ga0224537_1003749	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1071	Open in IMG/M
Ga0224537_1005349	Not Available	944	Open in IMG/M
Ga0224537_1006072	Not Available	903	Open in IMG/M
Ga0224537_1006575	Not Available	877	Open in IMG/M
Ga0224537_1007230	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	848	Open in IMG/M
Ga0224537_1007434	Not Available	841	Open in IMG/M
Ga0224537_1007462	Not Available	840	Open in IMG/M
Ga0224537_1007634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	833	Open in IMG/M
Ga0224537_1008680	Not Available	794	Open in IMG/M
Ga0224537_1009221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
Ga0224537_1009866	Not Available	758	Open in IMG/M
Ga0224537_1009869	Not Available	758	Open in IMG/M
Ga0224537_1010481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
Ga0224537_1011240	Not Available	723	Open in IMG/M
Ga0224537_1012420	Not Available	695	Open in IMG/M
Ga0224537_1013803	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
Ga0224537_1014329	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
Ga0224537_1015225	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	642	Open in IMG/M
Ga0224537_1015497	Not Available	638	Open in IMG/M
Ga0224537_1016355	Not Available	624	Open in IMG/M
Ga0224537_1017488	Not Available	608	Open in IMG/M
Ga0224537_1018262	Not Available	598	Open in IMG/M
Ga0224537_1018344	Not Available	597	Open in IMG/M
Ga0224537_1020162	Not Available	575	Open in IMG/M
Ga0224537_1020753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	567	Open in IMG/M
Ga0224537_1021784	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	557	Open in IMG/M
Ga0224537_1022082	Not Available	554	Open in IMG/M
Ga0224537_1024604	Not Available	530	Open in IMG/M
Ga0224537_1025978	Not Available	519	Open in IMG/M
Ga0224537_1027089	Not Available	511	Open in IMG/M
Ga0224537_1028214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
Ga0224537_1028297	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224537_1001132	Ga0224537_10011322	F102306	MLRLLLAAMAFLAAPLAWAGPRVAVQPFSGPGEDSKLVRHHVARIVANHGFAVLTSLPAVSGTGQYPQIARDRELKAFVVADIEQKGKKLAMTFLVWQGLDGSVVGRWELAAHKEKLAGVLKKEFWRRLGPAIAKAVAPPSNRLAPAPPMRIDASSPYDSDVEAVAWRRR
Ga0224537_1001608	Ga0224537_10016081	F065874	KKTSIKGTVDSAAALDDVVAKLKEIDCFEEINKGPLTEVSDGAKQFSLAINSKCP
Ga0224537_1001809	Ga0224537_10018092	F007838	MRNVITVLLFLSSVQVFGQVTMVVKDPTWKFEDETTETLEKADRLRQLEKLTEQVNTQKESLQAIKDATEKLKKINRKVANYHNLELAIAQVSDSYTRVLGSLKTINDHNCFKPSEYHTINESMMGLLSQTSYAISTLTVVLTDNLSEMSDGDRLLNMNQALKELRENLGVINSATIEVEILDNQRMQLRTLNYINSIFK
Ga0224537_1003749	Ga0224537_10037491	F056356	MKKITTRLIILMLILFSSCGRDLEQSKRYSDKKSETDSLIYQASLVINANKGMTDSLRKLRDDIYKAKSQKYKLPEIDKKITKAVEIESNIENVKKHLEAIRKFAENGEKATKRLIYLKRKYMTYATAIQIHDETIMIQEITDGL
Ga0224537_1005349	Ga0224537_10053492	F096520	MAQESLSVSIGECIVTFVASVSGESIKFAGDTFYNEEDLLGDITMDTERAKRFMAADGSRDVLMHSLPRAGTREVKFLLGANLDKLKSWGQARPQKVFDFDFYYKYNTQSSEGARIQRHKRCVFTDLPLQGIGRDKGYVTAKISFGDVAEVDPATDKEI
Ga0224537_1006072	Ga0224537_10060722	F022789	MIDRSRTAQGITATETLADAESVSTFEWRGLHLHVVTREPLSAEQVVTIERILKKAGSVGLFASVLGMMLGRSVRIRTERPSPDIRLEVGR
Ga0224537_1006575	Ga0224537_10065751	F096254	KNFAARLPGAAARAWAPLLGEATEAKGAIYARNTCPHCSSRLVKLPLRSMKCPSCQQPIVRIRGDDYVVYLLREEDAGPLRKEMDDHWALTRGWSEAGGRWDPEAIRRLRRVWMARYAALGLGVRVVVWGSGPCGPCRSLSKTVFEPAKAPELPLRECRNTYCNCRYEPVIKGSPRPRVD
Ga0224537_1007230	Ga0224537_10072302	F014092	KYNRIKGNANEQKVRLKKKPVVFKPNNFLFMKKVLLVLVLVMAVLAVNAQATKPTVTKEKPVRAAVLVADLQKTITDNIAKDYVGYTIKEATSVTANGIVTYEVVVVKDTMTETLVYDNNGVFVKKLPPPTPKKK
Ga0224537_1007434	Ga0224537_10074341	F096438	GVNATVDLGAAVSSSSAIYLQGTPAGNLTAAAGNVTLAGAQVSVAGDWPRNAPYTQTVSGNTVSVYVPAASAALVRVLQ
Ga0224537_1007462	Ga0224537_10074621	F042098	MKTIINLVFLIVLCVLKINAQEPAKTSDYKVPAVFKFDYKVTYEINNEEKKTPETVSYYFTKNGDYMSMESPESEKDKDINFMVSTKDGLMITFGEEPVPKNPNQHRKVLKVMDMHSMMKGSGEAIAALAKSMPKKENTEAEKKKPNDLDNFVKTGKTRQVFGYTAEEYSKEIKKEENGKMHEGTMSAWYAKVDFDPEMMFSLGMGNMGTGGAQSKVNQTHPNNMLGLGLTQKNYLLIEMDFSEKGGKSGTGMKVVSIEKTSF
Ga0224537_1007634	Ga0224537_10076342	F091193	QGYFMTLPKWRVAIKLLAGKKDKQMELPHVEPDLVIGANILKIVTYSNGKKILTANVKLKPTSQITVDMLSLCLRGEKYEAKESEIFEDKAQEPIKVTPITITNPKSYIVFFDVPGESAINSEDVKIYALANNREYYSEPFGIKFEASL
Ga0224537_1008680	Ga0224537_10086802	F014212	MKNKLLIAFLFLSASASAQLIHVEGSRAIGFDAGYVKNGFNGSSRITLYKNNNFAYRGSIDFERVDFAISKASIIYVNPELIYNFYTLGENFFLSAKGGILSGVEFLSNSILVKKESQFFVGENIGLCAEYYVTNKIMFNLDLDQRFFQLSKVGKASFIIKLGINYNF
Ga0224537_1009221	Ga0224537_10092212	F102391	MAIKLDAGGNIVVNETTGLSVQVSGQASLEQDAMSECRCEMNGNFADSEYGRDALVWKLSQSNIDRVADIKRIIQKYYEPNSISAENNTITVK
Ga0224537_1009866	Ga0224537_10098662	F101039	KARCALATEDQVGLFNSRNRGRVAIAIRADGRRVQVPVEDLGLVDVSVLGLLRSLELGIERVFVLITGSRREDGRRDER
Ga0224537_1009869	Ga0224537_10098691	F012538	MTEKGPSRAVASLNRDLLAVLVSEEAAEIGRSVAQIVRGEGWHEAKASAVLVDALVAWLGPAAVHPLGFYANGTGPVEVVARVGNYYITGHGIEDEQDLTINCCQRHRARFSQSRLEDLDLMVPNTRFTMANPVAKRAAERVGALLTEEIDPEIARVVLGA
Ga0224537_1010481	Ga0224537_10104812	F000842	LGQSKAEQERSYLAAESGKDRAYKAGRLKSHGAGRKSEGPIVPVKACSKTRWREGALL
Ga0224537_1011240	Ga0224537_10112401	F015142	PMMSISHSDLMPISAERSDAGLSQCETVIDIRQEFCWFSLS
Ga0224537_1012420	Ga0224537_10124201	F087858	VHPPTVPSQRIVLPSCFMSVKERGYVAMDMKDVMNQVREDIRKQPGSHFSDVYLRTVERGASGGDVRAALYEMLKRDEVRIKDGKFRMIAPVERRRPA
Ga0224537_1013803	Ga0224537_10138031	F010024	MTDKSESSFAVVRFNEQTYQSGGVVAVIKGTEAAEKTLNDFDWCQSEENRRAGWRYFLEATDLRPGMEPEKATRLRQVRFDLQES
Ga0224537_1013803	Ga0224537_10138032	F000042	MKNTKFVVEVNRTGARAPRYVQRIDRTPIQTTTSRRLALVMGKFTPEDAVKSIQNFRRIPELVSVQVHA
Ga0224537_1014329	Ga0224537_10143292	F032618	DVLGRMEVWLAHHGRAGLTAEDRAILAPRFEKLSRDATSVGALSLDLVNEMKTAA
Ga0224537_1015225	Ga0224537_10152251	F026911	MSNYYFCTDCEYIKIKMVPGVNGSPVKELSCPARFNPREGKWIPINGVNPHECPRNERFMEIQKQADERRLR
Ga0224537_1015497	Ga0224537_10154971	F095885	MQDRDIPPQEEGNTNGAVDGVRRDEARVARWAASVRSSRESLPLPWTIV
Ga0224537_1016355	Ga0224537_10163551	F100480	SEAIVIFRELAETAADPDTRSRARARLATLEATWQPLRIAEVPPADLALPPIPGVSLLVGDDQVTVAWALPPGTSSPALDVLVLQRTPGGIDPQKKLLPLTETSGRIGLLLPGVHSALAAAGTIRDGRFVAIVRSTG
Ga0224537_1017488	Ga0224537_10174882	F054973	MKTPYFPCWRSRLAPLGRRTAPVRQTTLAQLQEHLRDFLPAPL
Ga0224537_1018262	Ga0224537_10182621	F083425	MSSTRTGQNIDPQPIPDAEARTVPRPKTAATRLSVEELEEVESAAKRDGKSQAE
Ga0224537_1018344	Ga0224537_10183442	F079498	YQIVQSELQAIGINMSISLKDDPSWQSYVMTGHLHDALAARGQGILGFNFDIFRQFMRFTPGYQSNYLLVNDPVMVKFNNDAIAAQSVGAVQKLLHDCNLYVAQNHFAISLAQPSTFNMVQPWIMGAVGNNTLGDAVVGGGFADGAPLAVWINSSLKSSLGH
Ga0224537_1020162	Ga0224537_10201621	F098448	MTAKAKIWSLIAIGIAIVIFWAMLSMIFESVVFRLDSGWTFLPWYFCDIFATIGGIATFVFVYIQVKKQ
Ga0224537_1020753	Ga0224537_10207531	F093096	ASHLLVALRPQPTLKHFDPESIDYWIIDGDRGRAARLDRENRFPVTADYAWGRISLTDRLGVKNEFLSFGGTLRAQMTPEATALVDFSSHAPILRWSGHSQSTDPLSAEVGAFFARIKVPIDFAPGAEALVSRAAPRTLYCAFIQYQHERLAQVRTLRDANRWLAEWSSHESQRMESVAQDHWRAGAE
Ga0224537_1021784	Ga0224537_10217842	F068031	YWSVYVNRWDEFYTERSATTTNENGLRWQYAVTRRVVQRSSALLVLESPWMSLTRDALWYNGL
Ga0224537_1022082	Ga0224537_10220821	F002448	LPNLAEALGGGGDNIQYYSENRVVFGQRTQNNTRQAILSMPLGSIMIVWQGSGPGRLGNAQVYAHNYSLYLRAPEIEDVGYEDICDWIVNDVPVGGSLKMLHTPIDPNCEPMDFQLPNSQRNTVVISADGTTFEYFEVPVRLIESFNP
Ga0224537_1024604	Ga0224537_10246042	F008043	VGVYERSKTTQEEVVLAITAGKATKVSGIPKTNGESV
Ga0224537_1025978	Ga0224537_10259781	F038641	AFSSNLTVYASNTDCKVNLASVKGDCTPLIVGLVRAALFPDPSKPPADLSILDDNRVYPLASILCERSQAVGFDSLDTVVGVLSNPAGSIARDDPRYQLMQNLTGITITKAQLSQVAYVGPPRVYRVVATGESGKVKKRIIVILDSARMLDNPITNNPEGERAAGVIQYWREE
Ga0224537_1027089	Ga0224537_10270891	F058083	ARAAATIQPLDATTRQLAVLDAFAETGTYELTAAITGMPPGTVRNLLIEIREHYGAATTIGAYRAALAAGDLSTPGGRRLTVRS
Ga0224537_1028214	Ga0224537_10282142	F001490	MKHSDCAQLLRRIAQIQHMEPGKLCVMRLGPNGPYHNLQWREDGKAISRYVPSDQVEAVTQNTANYEQFQALVAQYAQLIIKQTRAERTTGFKKKTSPPRSSWPKTRK
Ga0224537_1028297	Ga0224537_10282971	F099181	AKSMPKKDQADAENKKPNEMDNFVKTGRTKQVFGYTAEEYSKEIKKEENGKMHEGTMSVWYAKVDFDPEMMFSLGMGSMTGGGAQSRMNQTHPNNMLGLGLTQKNYLMIEMDFSEKGGKSGTGMKVVSIEKTGFNKSTEGYFIKNYAGMSMMEMMQKESEEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022835: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 10-14

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences