NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023241

3300023241: Saline water microbial communities from Ace Lake, Antarctica - #474



Overview

Basic Information
IMG/M Taxon OID3300023241 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0255749 | Ga0222657
Sample NameSaline water microbial communities from Ace Lake, Antarctica - #474
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size176108874
Sequencing Scaffolds25
Novel Protein Genes26
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. F211
Not Available12
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium ZRK341
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B181
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)N/ADepth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007072Metagenome358Y
F010230Metagenome306Y
F029620Metagenome187N
F039448Metagenome / Metatranscriptome163Y
F042665Metagenome157N
F043706Metagenome155Y
F054792Metagenome139Y
F060609Metagenome / Metatranscriptome132Y
F063346Metagenome129N
F067269Metagenome125N
F067270Metagenome125Y
F069520Metagenome123Y
F069661Metagenome123N
F078142Metagenome / Metatranscriptome116Y
F089824Metagenome108N
F089876Metagenome108Y
F092080Metagenome107Y
F094884Metagenome / Metatranscriptome105Y
F096357Metagenome104N
F098516Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0222657_1005444All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. F213422Open in IMG/M
Ga0222657_1006532Not Available3010Open in IMG/M
Ga0222657_1007819All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium ZRK342664Open in IMG/M
Ga0222657_1010224All Organisms → cellular organisms → Bacteria2203Open in IMG/M
Ga0222657_1010328Not Available2190Open in IMG/M
Ga0222657_1021989All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1295Open in IMG/M
Ga0222657_1028729Not Available1070Open in IMG/M
Ga0222657_1028928All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum1065Open in IMG/M
Ga0222657_1030258Not Available1033Open in IMG/M
Ga0222657_1037838All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria883Open in IMG/M
Ga0222657_1038662Not Available871Open in IMG/M
Ga0222657_1046112All Organisms → cellular organisms → Bacteria → Proteobacteria769Open in IMG/M
Ga0222657_1046676Not Available763Open in IMG/M
Ga0222657_1049807Not Available727Open in IMG/M
Ga0222657_1051957Not Available705Open in IMG/M
Ga0222657_1054393All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon681Open in IMG/M
Ga0222657_1058491All Organisms → cellular organisms → Bacteria646Open in IMG/M
Ga0222657_1060828Not Available628Open in IMG/M
Ga0222657_1061207Not Available625Open in IMG/M
Ga0222657_1062444All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium617Open in IMG/M
Ga0222657_1067914All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18578Open in IMG/M
Ga0222657_1071504All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria556Open in IMG/M
Ga0222657_1072512All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon550Open in IMG/M
Ga0222657_1072562Not Available550Open in IMG/M
Ga0222657_1080465Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0222657_1005444Ga0222657_10054441F060609MNELEKSESVSVSRREFCRKAIKRSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0222657_1006532Ga0222657_10065321F067269MIKSHTGSYTCALERQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAASGTTRERYRGYDIVCTRLKNSNFCAHTIDVLGEGVGFEKNTLKSEDTEEVYAMLDEWIDNNNTNKTKTKTEQL
Ga0222657_1007819Ga0222657_10078195F039448MNTSKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKSHAFISNMYEDVQDVCDTLFAQYRTGVFTGTELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINM
Ga0222657_1010224Ga0222657_10102241F078142MSFETKAFNSIYASITIARCQIRIGRTVIAKALCAGIGKLRENTDEGQLGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDTKTGWVKARVGGRFPVGGLTRLGLEAVNE
Ga0222657_1010328Ga0222657_10103285F007072MELSKLGKKGQLSLDDAPTVVLLVGLVFLVMATIAMIGEKFGDSMADAQTLSATCNHSGNGGTGSVYTDCGTAYNTTVDLQTEIGNNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTAR
Ga0222657_1021989Ga0222657_10219891F069520MADIDPQAFGELIGDVKMLTKQTERSREDQMVANNILFAKIDNLSANGCVQGEGLRNRIKVLEEKPAKLVAIGSMILAALAVIGGACVWLLEKFRTL
Ga0222657_1028729Ga0222657_10287293F067270MNLPSEFIKYLRDEIKHFDKELISILELPNVKSLRDRIKKDKRDTKVMLALYGQMIACNIHIRTVKAKIRACNDKAMALLGHRLQRVKRKYKDSHRDTSYDL
Ga0222657_1028928Ga0222657_10289281F063346EPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPWFDVQIVASEITTKPSYHVEITYTGQEF
Ga0222657_1030258Ga0222657_10302582F098516MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVPRAQSRADAQDENEDIAASAYSGNSAEEITEVSCTYALKSGTLDLSDLVIGELAVQIMAESLELTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSKIGFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDDAPAWELAAVLADSGDGAVFMAEVTQDPQADEGQAVWHTASGAASFNLARLAS
Ga0222657_1033783Ga0222657_10337832F010230KAVQFRQVWSKLVPLLVSINGNEVRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQFRQVELKLVLLLVSINGNELRLLQLYQVKLKLVPLLVSINANELRLVQSRQVELKLVPLLVSINGNELRLLQFCQVELK
Ga0222657_1037838Ga0222657_10378383F063346KATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVEITYTGQEF
Ga0222657_1038662Ga0222657_10386621F098516VHDAGTLADIMVLVASSKVPRAKTRADAQDANEDIAASAYSGNDAGAIYEVSSTYALKSGTLDLSDLVIGELAVQIMAESLGLTTANGGWPQITVAGFLGLQTITAPTSFTNQFTLPAISVIGMKQAQVLGFTVSAGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRVDDAPAWELAAVLTDSPFLAEVTADPGEDQGQAAWHTAAGAAGLSLARLAT
Ga0222657_1046112Ga0222657_10461121F096357GYSMNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG
Ga0222657_1046676Ga0222657_10466761F069661KEKYNNFIKLATGEIVKKQEEIKQLQGFIEKYREDYEEGEE
Ga0222657_1049807Ga0222657_10498071F029620MAQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222657_1051957Ga0222657_10519573F069661AKLKISKEKYNNFIKLATGEIVKKQEEIKQLQGFIEKYRDDYEEGEE
Ga0222657_1054393Ga0222657_10543933F094884KGEIKFAYGYEVDDNEVSLNDLAMLNSFLDKIKAKAEEDFSERLEVNDKEFSVEGTKEXVLQ
Ga0222657_1058491Ga0222657_10584912F039448LAMAETIRKYAQMGEGVTIRAWQSLEADGSWKENPDRRFPMIDVRCSPSKTDDNESTLQVECAILMGTNTDDDKSHAFISNMYEAVQGVCDTMFSQFRSGVFTGEEIAYFLAKIVEDTSSDAFQFGGLTFGDGLAPSDDGGKSMIGITMIVHYGRSDF
Ga0222657_1060828Ga0222657_10608282F042665MTPPKMSFATLIMLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222657_1061207Ga0222657_10612071F092080MQDKRITIRIPFEIWKDLRELQTVGKISSIQQAAVSGMNKLIESLKWGEQEMRDNLKGAAKKRVLDCLVREKPLGNWEDVHGERTDADADRS
Ga0222657_1062444Ga0222657_10624441F089876KREMKKSQYRQKFDALAAEINQNLMATAVSYGNKLYEKSGWGSMVFYNKMASGAYDINVYPQKVTDRDKNNSGVPVSQEPIAFSKIMIATSVLAGKLPDGKVIADDKVYGKAMYELWKRNWSMTGGNGSNTLMLTYQNLFTYGWAAWRVYPRRVQVKRNGVDKILFDDIYREPLECTRTWMGVGFNNGDVWSQTEVYYEKDMPKE
Ga0222657_1067914Ga0222657_10679142F010230LMPLLVLINGNELRLVQFCQVEVKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLVQYCQVEVKLVPLLVSINGNELRLVQDRQVKVKSVPLLVSINGNEVRLLQLVQVARK
Ga0222657_1071504Ga0222657_10715042F060609NMNELPKSDAVSVGRREFCRKAIRGSSVAAAVGVAGYLAYRKPAIRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0222657_1072512Ga0222657_10725121F054792KVVLKKLDIGYLKLKVVGDSPYLPEPMDMAVLEKYNKIKSKQNYDKDDLSEEEKVKAKFYYTEDNKYGIPARAIYNSMIRGSSYLFDIKQGGMRNIKEGVTIKGDILPLKFKKQTEICHWGRTSGMKGSPRKILRNAFYDWEVEITVEFNKANLSAEQIINVLNWAGFHIGVGGFRKEKTGNF
Ga0222657_1072562Ga0222657_10725621F089824IAYIIKAYKSFDNTITQYDIADEYMIRQGIEITPRRVRRIIEKLIEKGLPILSSPHYPHAGYCWFTYDSERVECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQEEMF
Ga0222657_1080465Ga0222657_10804651F043706MHILYGILSTALLVHLVAMALDTGQPSVRVIILCAVVIIFAGAE
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