NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023439

3300023439: Hydrothermal Fe-rich mat microbial community from TAG Site, Mid-Atlantic Ridge, Atlantic Ocean - 665-MMA12



Overview

Basic Information
IMG/M Taxon OID3300023439 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133538 | Gp0295821 | Ga0256752
Sample NameHydrothermal Fe-rich mat microbial community from TAG Site, Mid-Atlantic Ridge, Atlantic Ocean - 665-MMA12
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Delaware
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size160924757
Sequencing Scaffolds7
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Fe-Rich Mat Reference Genomes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationInternational: TAG Site, Mid-Atlantic Ridge
CoordinatesLat. (o)26.137196Long. (o)-44.826442Alt. (m)N/ADepth (m)3626.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038413Metagenome166Y
F039667Metagenome / Metatranscriptome163Y
F057990Metagenome / Metatranscriptome135Y
F067779Metagenome / Metatranscriptome125Y
F075520Metagenome118Y
F082766Metagenome / Metatranscriptome113Y
F083237Metagenome / Metatranscriptome113Y
F096262Metagenome105N
F102809Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256752_1042406All Organisms → Viruses → Predicted Viral1043Open in IMG/M
Ga0256752_1051147All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea947Open in IMG/M
Ga0256752_1065762All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae833Open in IMG/M
Ga0256752_1067900All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea819Open in IMG/M
Ga0256752_1086748All Organisms → Viruses → unclassified viruses → Circular genetic element sp.723Open in IMG/M
Ga0256752_1100764Not Available670Open in IMG/M
Ga0256752_1114264Not Available629Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256752_1042406Ga0256752_10424062F057990MVQKAFSMLDKDCSGQVTIQDIIGIYDVSMNPEFIEGRKTKEDILGAFLNEFDGARGNNDGVITQAEFFDYYTDLSMSTPSDEYFVRMMESAW
Ga0256752_1042406Ga0256752_10424063F039667MAFYGVGLDVKVRELNLQFKLAIQSKGGVGLRSLKRIFQRMDFNGNKKLDASEFE
Ga0256752_1045653Ga0256752_10456532F102809VLLWFHLYSSFVAFVFIKNKKEGMMDHWRHAIGDINKTTGSIHNDQRMPADHKKNYVRYSNFHQVRRNKKLSMIWLNWWCRDQSFRKYFEMRKRHGIKPSLSGFSHEHIYDDVAKKNSELAAMRYSRSAM
Ga0256752_1051147Ga0256752_10511471F082766VLFNLAVPLYCPTEDSEHNLYAISTNGDVYQVTEGQMEVAFQTGGQPTALIFDSQGSSFIADQAHQAIMS
Ga0256752_1065762Ga0256752_10657622F083237MFKQSRFFLSVAQKMTYEDGFVFTENNVVQYLAELEEYISSLITYTAFKRDEPNAAVSAIPLERLPQKEFNKRDMQIDPSVDAHWN
Ga0256752_1067900Ga0256752_10679001F067779MVSNGSKPRDMAQKWRAFKNIARFFKNPMSYMYWKTQTLHSQNRVRIIWVLLWFHLYSSFVAFVFIKNKKEGMMDHWRHAIGDINKTTGSIHNDQRMPADHKKNYVRYSNFHQVRRNKKLSMIWLNWWCRDQSFRKYFEMRKRHGIKPSLSGFSHEHIYDDVAKKNGELAALRYSR
Ga0256752_1086748Ga0256752_10867481F038413MCAFYRSREGALTAADSMTSLGSLYGQSTTASVQIPKQATSIVGIIATVATDSATNGATTFAM
Ga0256752_1100764Ga0256752_11007641F075520MKTLHYILNTKTDESFDTNEMRFYANNWSPEMDEDIGYLQGLINNDPVKFKDCVIETLEFEND
Ga0256752_1114264Ga0256752_11142641F096262MGVSTVGTGTDLCTGFKLTGTALQEGDATFMGPAIAQAASGGTGVANCVMQEKTALGVTSGNTLDIQVAVTTAA
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