Sample 3300024988

Overview

Basic Information
IMG/M Taxon OID	3300024988 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118793 \| Gp0095076 \| Ga0209958
Sample Name	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	341047186
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. SG61-1L	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
Type	Engineered
Taxonomy	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	South Africa: Cape Town
Coordinates	Lat. (^o)	-33.936637	Long. (^o)	18.478905	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006009	Metagenome / Metatranscriptome	384	Y
F009854	Metagenome / Metatranscriptome	312	Y
F025775	Metagenome	200	Y
F050494	Metagenome / Metatranscriptome	145	Y
F065495	Metagenome / Metatranscriptome	127	Y

Family

Category

Number of Sequences

3D Structure?

F006009

Metagenome / Metatranscriptome

384

F009854

Metagenome / Metatranscriptome

312

F025775

Metagenome

200

F050494

Metagenome / Metatranscriptome

145

F065495

Metagenome / Metatranscriptome

127

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209958_1002413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	10545	Open in IMG/M
Ga0209958_1015168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. SG61-1L	2465	Open in IMG/M
Ga0209958_1044278	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp.	1169	Open in IMG/M
Ga0209958_1064409	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	876	Open in IMG/M
Ga0209958_1088043	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	683	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209958_1002413

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans

10545

Open in IMG/M

Ga0209958_1015168

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. SG61-1L

2465

Open in IMG/M

Ga0209958_1044278

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp.

1169

Open in IMG/M

Ga0209958_1064409

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia

876

Open in IMG/M

Ga0209958_1088043

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia

683

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209958_1002413	Ga0209958_100241312	F025775	MKQFLTFQSFPMVVVVALIVWSWISILSVVIGSLF
Ga0209958_1015168	Ga0209958_10151682	F006009	MDTEPKMIWRGVAAGTVMGLGLGGILALFIALRPEMFAGLAG
Ga0209958_1044278	Ga0209958_10442782	F009854	MNDRGARADVFTALQDLAEVIPEMRAGQLMAAVGELCADLHGRGLWDADDDEVLEAVWQFRRNYEAAAITN
Ga0209958_1064409	Ga0209958_10644092	F065495	MLHRLTVGHLDVAAVERRQTVPVKALEMDVVHRLLGELGEKDDDGDVTLGGCKVKFENGAVSCLWMGGRANRVAEEFALRMHRETGCVIADVGGYRVIEPDELTGLTGQASGSKPGAVRT
Ga0209958_1088043	Ga0209958_10880431	F050494	MSQRLTVHGRYVGRTFIPDGPLPDAEGAAELVITPTVPLSVGSIADAFGKATVLRSGDEILAQVRADRDEWDDR

Scaffold ID

Protein ID

Family

Sequence

Ga0209958_1002413

Ga0209958_100241312

F025775

MKQFLTFQSFPMVVVVALIVWSWISILSVVIGSLF

Ga0209958_1015168

Ga0209958_10151682

F006009

MDTEPKMIWRGVAAGTVMGLGLGGILALFIALRPEMFAGLAG

Ga0209958_1044278

Ga0209958_10442782

F009854

MNDRGARADVFTALQDLAEVIPEMRAGQLMAAVGELCADLHGRGLWDADDDEVLEAVWQFRRNYEAAAITN

Ga0209958_1064409

Ga0209958_10644092

F065495

MLHRLTVGHLDVAAVERRQTVPVKALEMDVVHRLLGELGEKDDDGDVTLGGCKVKFENGAVSCLWMGGRANRVAEEFALRMHRETGCVIADVGGYRVIEPDELTGLTGQASGSKPGAVRT

Ga0209958_1088043

Ga0209958_10880431

F050494

MSQRLTVHGRYVGRTFIPDGPLPDAEGAAELVITPTVPLSVGSIADAFGKATVLRSGDEILAQVRADRDEWDDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300024988: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences