Sample 3300026232

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300026232

3300026232: Upper troposphere microbial communities from Maryland, USA - DAQMD-018 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300026232 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110167 \| Gp0085190 \| Ga0209545
Sample Name	Upper troposphere microbial communities from Maryland, USA - DAQMD-018 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	44507229
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
Type	Environmental
Taxonomy	Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Aerosol (non-saline)

Location Information
Location	USA: Maryland, Virginia
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077438	Metagenome / Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209545_103661	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209545_103661	Ga0209545_1036611	F077438	SVTSLCCVYSTHRVERSFTQSRLETLFLWNLQVEISAALRSIVEKEISS

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