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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027093 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085736 | Gp0057302 | Ga0208093 |
| Sample Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF021 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 25356525 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → solid layer → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Harvard Forest LTER, Petersham, MA, USA | |||||||
| Coordinates | Lat. (o) | 42.471116 | Long. (o) | -72.17263 | Alt. (m) | N/A | Depth (m) | 0 to .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000098 | Metagenome / Metatranscriptome | 2300 | Y |
| F005919 | Metagenome / Metatranscriptome | 386 | Y |
| F014995 | Metagenome / Metatranscriptome | 258 | Y |
| F017508 | Metagenome / Metatranscriptome | 240 | Y |
| F017737 | Metagenome / Metatranscriptome | 239 | Y |
| F017872 | Metagenome / Metatranscriptome | 238 | Y |
| F026088 | Metagenome | 199 | Y |
| F035370 | Metagenome / Metatranscriptome | 172 | Y |
| F037348 | Metagenome / Metatranscriptome | 168 | Y |
| F097993 | Metagenome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208093_100354 | All Organisms → cellular organisms → Bacteria | 1684 | Open in IMG/M |
| Ga0208093_100804 | Not Available | 1301 | Open in IMG/M |
| Ga0208093_102936 | Not Available | 789 | Open in IMG/M |
| Ga0208093_104521 | Not Available | 661 | Open in IMG/M |
| Ga0208093_105035 | Not Available | 633 | Open in IMG/M |
| Ga0208093_105599 | Not Available | 605 | Open in IMG/M |
| Ga0208093_105736 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium | 599 | Open in IMG/M |
| Ga0208093_105993 | Not Available | 590 | Open in IMG/M |
| Ga0208093_107836 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 527 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208093_100354 | Ga0208093_1003541 | F037348 | MGHESRIELWSPNLTTFSFVGFGTDRLRREEAMKTAGRENPNRWATMASNRAPAAGDQNRSCSIQWAEKQEKSQPVEMCFFLTSTFIEH |
| Ga0208093_100804 | Ga0208093_1008042 | F026088 | MAHETSSLSFLRRRPLWWFLIGPAGVAGAVWGKRLGEDRPILGHIVFILGLALIAIGHGWAINWAYVRLAGHHEHHQRRA |
| Ga0208093_102936 | Ga0208093_1029362 | F097993 | MTETPHKTGPVWAELPDDVLESVEIVRIAAIGEPC |
| Ga0208093_104521 | Ga0208093_1045213 | F005919 | MAAVKSRFWTLLIRREGRFLPEFGSFVRGEAIAKMSELRLKGVRRSDLKIIASDPDLAAITKDVEALNDA |
| Ga0208093_105035 | Ga0208093_1050351 | F035370 | MSYHQRPHELRLAISSEAEALISDFAADAYAEACRRASEASSDSLARDWSVVAATIARWSGRRSSVLDALFG |
| Ga0208093_105599 | Ga0208093_1055991 | F014995 | PRADDLEPQTPAAFLPGGMLGIQLGGSWQRSKQNPSLHRLNCQAVKDASDFDEVCFFKASAASRVGGAQIHDGFIVGKGDQVVLVGTGISIKNADDPLAESVVQAFQSQINSAFQHTGDNVLFVTLPARRMSAAELAGFSQKAPVLLVQLETKSHELAVLYGYLAPVNAFGSLTSD |
| Ga0208093_105736 | Ga0208093_1057362 | F017737 | MNARTIAQGKPASKPAPVSPRFDKKFIEDHNLVERYLENKLPFKGARDLEQWCHAHPDYLNELKLSERAHASLKLLEASGRPQDLGEPKPPWWKSIYLLIGLAV |
| Ga0208093_105993 | Ga0208093_1059931 | F017508 | MRALIAMFLAALLAGCCVGGYPPMWSADPPPFNAFQAGMKPAVGMPTDVAILIVGSRPVSSKATNCGIVTGYEWPCDVLKFGCCEGNQLLVYIAPTPDGRGAVNSWGVGS |
| Ga0208093_106179 | Ga0208093_1061791 | F000098 | MRIYIIGNDGITLCREPPATVNEGEVAVASRKELHAARLSGKRLLALRNALPGVEKQTKVGDRDTLIDQLWSAIEALPDPDQPSDTKGPSKQQAVIAMLQRPEGATVDEVASVM |
| Ga0208093_107836 | Ga0208093_1078361 | F017872 | FTKRMVNTNRGDYAASFQGKKDSFVLTMTPKQLDPQHRSFYAEDDFKIHADETKLADENSPVVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |