NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027421

3300027421: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027421 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072031 | Ga0207563
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29478071
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005189Metagenome / Metatranscriptome409Y
F005922Metagenome / Metatranscriptome386Y
F015240Metagenome / Metatranscriptome256Y
F017759Metagenome239N
F026346Metagenome / Metatranscriptome198Y
F038480Metagenome166Y
F050439Metagenome145N
F052694Metagenome / Metatranscriptome142N
F056406Metagenome137N
F072495Metagenome121N
F085323Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207563_100037Not Available1836Open in IMG/M
Ga0207563_101102Not Available828Open in IMG/M
Ga0207563_101123Not Available824Open in IMG/M
Ga0207563_101942Not Available698Open in IMG/M
Ga0207563_101946Not Available697Open in IMG/M
Ga0207563_102892Not Available620Open in IMG/M
Ga0207563_103716Not Available574Open in IMG/M
Ga0207563_103906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae564Open in IMG/M
Ga0207563_104651Not Available534Open in IMG/M
Ga0207563_105143Not Available518Open in IMG/M
Ga0207563_105809All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207563_100037Ga0207563_1000373F072495MLANEVERLKPPQYVAFRTMERWVVIPVIARIESREGGRRYGYWFSRFTPEGAFREVPVDYVVDLGSDDDAEKLIDLIRGGRELPAEFVQRLHVIAD
Ga0207563_101102Ga0207563_1011021F052694MSKSSKFVSLTLVVATLIVGTSTAWAGPLAKGTNTHVVDDGTVSWTLPAGQCPAAPDGLTGSGERQRVTITKVNADGSTTIIINDVVRGTAWDATGTYKFVYENHSIDQVPAGGGVHQISMEDNFILNGNGSVGHLAVGFNWAWTYTDPNGPIDVLPLANLVERSTRGEPLLCDPI
Ga0207563_101123Ga0207563_1011231F085323MRSRAGQRVPVWLQMIIVVVCATAMVIAADAEDHCGETTAKCVVTIGKG
Ga0207563_101942Ga0207563_1019422F056406WHPSGWSALRQEATATKPPVSVTEQYTGSIIIVPSRGEDCRQMMLDNRTGRMWDKGVVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207563_101946Ga0207563_1019461F050439AAVFHSLVRFKELSAWHRFTYTQLYPAVLGSMLYDVLHVTEGWGPLQAVEISITLLYCIDFFYLQSDLGSDQLPQGNWRDTMLDAAIAVVFGAAYWQASDRKLFTCYALLAVAGALIVAYHFTPNRRFLWAILPHSVLTVLFVSLAWLARGLENVTWTFAVVSWFPTIWYGTYVFWLAHRILPSGK
Ga0207563_102892Ga0207563_1028921F017759FGVVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDALRLARNDPAPKAPVTRPAFPAGGIAYRTCAIDNRLIERLKKSEGPKILIVQNSCDTEFFMANLRQIPSILRGNDSAPSPRKKIYPSIKRMMTSVARRICRTAKNARTAATSHP
Ga0207563_103716Ga0207563_1037161F005189QPVFAQDVDPRCKDIFDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207563_103906Ga0207563_1039062F026346ASRVASIVIETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207563_104651Ga0207563_1046511F015240MATKADFSEDEWKTMQKGITGAGVLVSVSDRDFTDTFGEASAVA
Ga0207563_105143Ga0207563_1051431F038480MKTVLVSIGLCLAATAVHSMPLSLLNANVAQPVIAVSDQCGDRCGSSRSYVKDRRAVMAGYSGGYVLVRDPLIQRRPFCPFGSYVACVVSGTYCVDLCH
Ga0207563_105809Ga0207563_1058091F005922MSANSDYQRTDDEIVALLSQWLMKTLGNDELRKRIDALDTEDLAPGQRVAVEELMTALAGAFPGETGGLEMVVRETIEALAYGE
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