Basic Information | |
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IMG/M Taxon OID | 3300028005 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133410 | Gp0290878 | Ga0247708 |
Sample Name | Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-W_N |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 79007464 |
Sequencing Scaffolds | 24 |
Novel Protein Genes | 24 |
Associated Families | 19 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3 |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei | 1 |
Not Available | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059 | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → hill → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | USA: Arizona | |||||||
Coordinates | Lat. (o) | 32.5789 | Long. (o) | -110.8512 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003586 | Metagenome / Metatranscriptome | 478 | Y |
F007498 | Metagenome / Metatranscriptome | 350 | Y |
F015966 | Metagenome / Metatranscriptome | 250 | Y |
F019847 | Metagenome / Metatranscriptome | 227 | Y |
F020786 | Metagenome / Metatranscriptome | 222 | Y |
F026704 | Metagenome / Metatranscriptome | 197 | Y |
F029834 | Metagenome | 187 | Y |
F032127 | Metagenome | 180 | Y |
F047807 | Metagenome | 149 | Y |
F048859 | Metagenome / Metatranscriptome | 147 | Y |
F049823 | Metagenome | 146 | Y |
F051444 | Metagenome / Metatranscriptome | 144 | Y |
F051753 | Metagenome / Metatranscriptome | 143 | Y |
F065699 | Metagenome / Metatranscriptome | 127 | Y |
F067309 | Metagenome | 125 | Y |
F070233 | Metagenome / Metatranscriptome | 123 | Y |
F076730 | Metagenome | 117 | Y |
F100172 | Metagenome | 102 | Y |
F102223 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0247708_1001169 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 3922 | Open in IMG/M |
Ga0247708_1001377 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3496 | Open in IMG/M |
Ga0247708_1001638 | All Organisms → cellular organisms → Bacteria | 3101 | Open in IMG/M |
Ga0247708_1002000 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 2689 | Open in IMG/M |
Ga0247708_1002351 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 2430 | Open in IMG/M |
Ga0247708_1002466 | All Organisms → cellular organisms → Bacteria | 2357 | Open in IMG/M |
Ga0247708_1002630 | All Organisms → cellular organisms → Bacteria | 2252 | Open in IMG/M |
Ga0247708_1002701 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei | 2222 | Open in IMG/M |
Ga0247708_1004342 | Not Available | 1654 | Open in IMG/M |
Ga0247708_1004447 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059 | 1629 | Open in IMG/M |
Ga0247708_1004459 | All Organisms → cellular organisms → Bacteria | 1626 | Open in IMG/M |
Ga0247708_1006846 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | 1247 | Open in IMG/M |
Ga0247708_1007358 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 1194 | Open in IMG/M |
Ga0247708_1007907 | Not Available | 1141 | Open in IMG/M |
Ga0247708_1008169 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1117 | Open in IMG/M |
Ga0247708_1008531 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1089 | Open in IMG/M |
Ga0247708_1013360 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium | 836 | Open in IMG/M |
Ga0247708_1016187 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium | 748 | Open in IMG/M |
Ga0247708_1018162 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 701 | Open in IMG/M |
Ga0247708_1020616 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium | 653 | Open in IMG/M |
Ga0247708_1031671 | All Organisms → cellular organisms → Bacteria | 518 | Open in IMG/M |
Ga0247708_1031994 | Not Available | 515 | Open in IMG/M |
Ga0247708_1033033 | Not Available | 507 | Open in IMG/M |
Ga0247708_1033340 | Not Available | 504 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0247708_1001169 | Ga0247708_10011691 | F049823 | VLRLLHLDLLEQGHSAHTLGEWLWGMHWFPHLNHREEVLALAQSLPAQWRDGMLCDPQILLQFPHVGPEPRIAFHIDEEPPWADGRRYVRIVGVALTPWRRENGGLLVKDGDEAVAVELDPTDAVMLAPDLEHSGGVNRTGSLRYGVYFRWLQD |
Ga0247708_1001377 | Ga0247708_10013773 | F051753 | MDASDADGEQLELTLGPLYLVIAEDRVNGPLTGRPARAYRSPPQSLEDARCLAALLLDRGGDLEGDGPWRRPLAGGQRHVSIVLAPSSRLG |
Ga0247708_1001638 | Ga0247708_10016386 | F003586 | MAKRKQTRAEREQREAQRAEMLANAERTRKLAERAQAKLDAATPQR |
Ga0247708_1002000 | Ga0247708_10020002 | F076730 | MSDGIRNVGATASFNRDASGDPAFAAVDLRLFALTGGGEQVDDPQPASLTVRCERTKLAALELSVQMSLRLRQAPSGARLEAWQRICDELGARGIHTDPATLHASSFRFVPDDDVRAAQQAVWPRGH |
Ga0247708_1002351 | Ga0247708_10023512 | F029834 | MNTPRSRLRITAYHIVEASPVPWTRSHGRGGMPLGGAMPASTSWCCVATVP |
Ga0247708_1002466 | Ga0247708_10024665 | F049823 | MGPAPERARLEVSRGIVPQARIDDALRLLHLDLLEFGHSAETLSTWLWAMHWFPHLNYRDEIVALAEALPAEWRGGQLCDPQILLQFPHVGPEPEISFHVDDEPPWAEGRRYARIVGVPLSPWRRENGGLLVKSDGAPVPVELDPGDAVMLAPDLEHSGGVNQTGSPRYGVYFRWLEER |
Ga0247708_1002630 | Ga0247708_10026301 | F065699 | MTEQYIGWALVVGLALGGALVWFAIGRIPRAADELTPDERRAEAEWLSAEINSRGGVAPVELVDEILDLHADRGAGRHLRSD |
Ga0247708_1002701 | Ga0247708_10027013 | F102223 | MAPRRGEAPRDLSYAAFMPGLDAPDEIDVIAEDVDGSALLSIVQTGPWARDVARERKRLKRKLGLYLRYALEGQMVATYPSLEGRPVVIALMYDEQPPQALLDYWRRRGETAARDGVTLKTQALGETVWRA |
Ga0247708_1004342 | Ga0247708_10043423 | F070233 | MHGLVSIELMHRRWGGPLVAHLQGDPEENFTRAIGSLLDALDGR |
Ga0247708_1004447 | Ga0247708_10044472 | F100172 | MITFTAILAGFTLFEVLAFRHGAETRPGFDERPERAPHRHTV |
Ga0247708_1004459 | Ga0247708_10044593 | F020786 | MVTLALRPIGHLAAWLVWHSTRISLLDDLDSPRPPDAG |
Ga0247708_1006846 | Ga0247708_10068462 | F100172 | MPIMSTMIIFTTVIAGFALFEVLALRHGAESRPGFDERPERAPQRII |
Ga0247708_1007358 | Ga0247708_10073581 | F032127 | MTMTLDEALLALNDRLGHEVTAWVEVAHETPLLIASGLLENWSQETTGLPVEAAPAHFDLRGHYSIAEARFDLSEAPVESVSQRKDGLTFRIEGGARLVVTWTPVVDPGV |
Ga0247708_1007907 | Ga0247708_10079072 | F047807 | VVQLRLDLAECPAPAVALWELLEEAQREMAMVLLATLIARSVAQDEAAGDE |
Ga0247708_1008169 | Ga0247708_10081691 | F015966 | MEPGSNFSLAGAGSVLIGATAAVIAVGIAVGWLLGSIAWGFLVGAVLGIPFGVFAVYKRYGHAV |
Ga0247708_1008531 | Ga0247708_10085312 | F100172 | MLITASILAGLALFEVLAYSHGAETRPGFDERPERGPRRNI |
Ga0247708_1013360 | Ga0247708_10133602 | F007498 | MELLIVMVLMFVGVVYGYYTVSGSGIAERPYGKVHGGAPGAFGPGSASGRDDRVVMRDWSRGAR |
Ga0247708_1016187 | Ga0247708_10161872 | F102223 | MPGIDVPDEIDVIAEDADGSALLSIIQTGAWSKDGSERGRLKRKLGVYLRYALEGQMVAAYPSLRDKPVVIALMYEETPPQVLLDYWRRRGDTLARDGVTLTARSLGDTVWRA |
Ga0247708_1018162 | Ga0247708_10181622 | F026704 | MLKRGYDVDENAIRFSNYFHVLRELVHLSCGWLALEPSFERKYELGDHLHDDARAISKIKRRLYELRHPSDYPGAPGDELNALLDALAAADTPEAYRELVYGVVKPTLVAAIRVHLAELDPITDEPSLRLLEQVAGRQERHAQEGGQVLHCDTFG |
Ga0247708_1020616 | Ga0247708_10206161 | F048859 | VAEEPIAFSKLLAGYGTTSIGDGMQVDSVFALLKVRGEDGSPAWSVRSGGTALPPEELLGVLEGLTTSMRQRLTMAWKHQSAPPTIGGPAPPVPFSELLAGLETVGVGDEYVIESVFAVIKARRPDGVPAWFVRSSEMKLSPEERLGALEGYAATVRQGLAETWKW |
Ga0247708_1031671 | Ga0247708_10316711 | F020786 | YGGRMVSTALRPIGHLAAWLVWQSSRISLLGELDSPRPPGAD |
Ga0247708_1031994 | Ga0247708_10319941 | F019847 | MMQSVILVVATALATWFIMRWLRWRPAPAEPLTGEEKEIGRARDIGTQLDGARDRASLVETERNRVALAKAVKAALWVTDARLNLAVPELLQLAQRWAGKSKVRGKKWTPPEGVTQIESVDDPNSPSAAWVSKYHHWRLESECRPSILPEEIEEDMR |
Ga0247708_1033033 | Ga0247708_10330332 | F067309 | MTNIIGRPNGDLLDVMLGDGADPEQAIINGSERRDGSEDDRRGDEPTAPKP |
Ga0247708_1033340 | Ga0247708_10333401 | F051444 | MVALGPHTTMRGMAQMKKRIALLAAIAMMAGGVAGGVASAAIDEGPGRGNPDKNPAGKCPPGQNQDTSVGGLKKCR |
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