NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028005

3300028005: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-W_N



Overview

Basic Information
IMG/M Taxon OID3300028005 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133410 | Gp0290878 | Ga0247708
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-W_N
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size79007464
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei1
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00591
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomehillsoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5789Long. (o)-110.8512Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003586Metagenome / Metatranscriptome478Y
F007498Metagenome / Metatranscriptome350Y
F015966Metagenome / Metatranscriptome250Y
F019847Metagenome / Metatranscriptome227Y
F020786Metagenome / Metatranscriptome222Y
F026704Metagenome / Metatranscriptome197Y
F029834Metagenome187Y
F032127Metagenome180Y
F047807Metagenome149Y
F048859Metagenome / Metatranscriptome147Y
F049823Metagenome146Y
F051444Metagenome / Metatranscriptome144Y
F051753Metagenome / Metatranscriptome143Y
F065699Metagenome / Metatranscriptome127Y
F067309Metagenome125Y
F070233Metagenome / Metatranscriptome123Y
F076730Metagenome117Y
F100172Metagenome102Y
F102223Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247708_1001169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3922Open in IMG/M
Ga0247708_1001377All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3496Open in IMG/M
Ga0247708_1001638All Organisms → cellular organisms → Bacteria3101Open in IMG/M
Ga0247708_1002000All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2689Open in IMG/M
Ga0247708_1002351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2430Open in IMG/M
Ga0247708_1002466All Organisms → cellular organisms → Bacteria2357Open in IMG/M
Ga0247708_1002630All Organisms → cellular organisms → Bacteria2252Open in IMG/M
Ga0247708_1002701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei2222Open in IMG/M
Ga0247708_1004342Not Available1654Open in IMG/M
Ga0247708_1004447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00591629Open in IMG/M
Ga0247708_1004459All Organisms → cellular organisms → Bacteria1626Open in IMG/M
Ga0247708_1006846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1247Open in IMG/M
Ga0247708_1007358All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1194Open in IMG/M
Ga0247708_1007907Not Available1141Open in IMG/M
Ga0247708_1008169All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1117Open in IMG/M
Ga0247708_1008531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1089Open in IMG/M
Ga0247708_1013360All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium836Open in IMG/M
Ga0247708_1016187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium748Open in IMG/M
Ga0247708_1018162All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria701Open in IMG/M
Ga0247708_1020616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium653Open in IMG/M
Ga0247708_1031671All Organisms → cellular organisms → Bacteria518Open in IMG/M
Ga0247708_1031994Not Available515Open in IMG/M
Ga0247708_1033033Not Available507Open in IMG/M
Ga0247708_1033340Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247708_1001169Ga0247708_10011691F049823VLRLLHLDLLEQGHSAHTLGEWLWGMHWFPHLNHREEVLALAQSLPAQWRDGMLCDPQILLQFPHVGPEPRIAFHIDEEPPWADGRRYVRIVGVALTPWRRENGGLLVKDGDEAVAVELDPTDAVMLAPDLEHSGGVNRTGSLRYGVYFRWLQD
Ga0247708_1001377Ga0247708_10013773F051753MDASDADGEQLELTLGPLYLVIAEDRVNGPLTGRPARAYRSPPQSLEDARCLAALLLDRGGDLEGDGPWRRPLAGGQRHVSIVLAPSSRLG
Ga0247708_1001638Ga0247708_10016386F003586MAKRKQTRAEREQREAQRAEMLANAERTRKLAERAQAKLDAATPQR
Ga0247708_1002000Ga0247708_10020002F076730MSDGIRNVGATASFNRDASGDPAFAAVDLRLFALTGGGEQVDDPQPASLTVRCERTKLAALELSVQMSLRLRQAPSGARLEAWQRICDELGARGIHTDPATLHASSFRFVPDDDVRAAQQAVWPRGH
Ga0247708_1002351Ga0247708_10023512F029834MNTPRSRLRITAYHIVEASPVPWTRSHGRGGMPLGGAMPASTSWCCVATVP
Ga0247708_1002466Ga0247708_10024665F049823MGPAPERARLEVSRGIVPQARIDDALRLLHLDLLEFGHSAETLSTWLWAMHWFPHLNYRDEIVALAEALPAEWRGGQLCDPQILLQFPHVGPEPEISFHVDDEPPWAEGRRYARIVGVPLSPWRRENGGLLVKSDGAPVPVELDPGDAVMLAPDLEHSGGVNQTGSPRYGVYFRWLEER
Ga0247708_1002630Ga0247708_10026301F065699MTEQYIGWALVVGLALGGALVWFAIGRIPRAADELTPDERRAEAEWLSAEINSRGGVAPVELVDEILDLHADRGAGRHLRSD
Ga0247708_1002701Ga0247708_10027013F102223MAPRRGEAPRDLSYAAFMPGLDAPDEIDVIAEDVDGSALLSIVQTGPWARDVARERKRLKRKLGLYLRYALEGQMVATYPSLEGRPVVIALMYDEQPPQALLDYWRRRGETAARDGVTLKTQALGETVWRA
Ga0247708_1004342Ga0247708_10043423F070233MHGLVSIELMHRRWGGPLVAHLQGDPEENFTRAIGSLLDALDGR
Ga0247708_1004447Ga0247708_10044472F100172MITFTAILAGFTLFEVLAFRHGAETRPGFDERPERAPHRHTV
Ga0247708_1004459Ga0247708_10044593F020786MVTLALRPIGHLAAWLVWHSTRISLLDDLDSPRPPDAG
Ga0247708_1006846Ga0247708_10068462F100172MPIMSTMIIFTTVIAGFALFEVLALRHGAESRPGFDERPERAPQRII
Ga0247708_1007358Ga0247708_10073581F032127MTMTLDEALLALNDRLGHEVTAWVEVAHETPLLIASGLLENWSQETTGLPVEAAPAHFDLRGHYSIAEARFDLSEAPVESVSQRKDGLTFRIEGGARLVVTWTPVVDPGV
Ga0247708_1007907Ga0247708_10079072F047807VVQLRLDLAECPAPAVALWELLEEAQREMAMVLLATLIARSVAQDEAAGDE
Ga0247708_1008169Ga0247708_10081691F015966MEPGSNFSLAGAGSVLIGATAAVIAVGIAVGWLLGSIAWGFLVGAVLGIPFGVFAVYKRYGHAV
Ga0247708_1008531Ga0247708_10085312F100172MLITASILAGLALFEVLAYSHGAETRPGFDERPERGPRRNI
Ga0247708_1013360Ga0247708_10133602F007498MELLIVMVLMFVGVVYGYYTVSGSGIAERPYGKVHGGAPGAFGPGSASGRDDRVVMRDWSRGAR
Ga0247708_1016187Ga0247708_10161872F102223MPGIDVPDEIDVIAEDADGSALLSIIQTGAWSKDGSERGRLKRKLGVYLRYALEGQMVAAYPSLRDKPVVIALMYEETPPQVLLDYWRRRGDTLARDGVTLTARSLGDTVWRA
Ga0247708_1018162Ga0247708_10181622F026704MLKRGYDVDENAIRFSNYFHVLRELVHLSCGWLALEPSFERKYELGDHLHDDARAISKIKRRLYELRHPSDYPGAPGDELNALLDALAAADTPEAYRELVYGVVKPTLVAAIRVHLAELDPITDEPSLRLLEQVAGRQERHAQEGGQVLHCDTFG
Ga0247708_1020616Ga0247708_10206161F048859VAEEPIAFSKLLAGYGTTSIGDGMQVDSVFALLKVRGEDGSPAWSVRSGGTALPPEELLGVLEGLTTSMRQRLTMAWKHQSAPPTIGGPAPPVPFSELLAGLETVGVGDEYVIESVFAVIKARRPDGVPAWFVRSSEMKLSPEERLGALEGYAATVRQGLAETWKW
Ga0247708_1031671Ga0247708_10316711F020786YGGRMVSTALRPIGHLAAWLVWQSSRISLLGELDSPRPPGAD
Ga0247708_1031994Ga0247708_10319941F019847MMQSVILVVATALATWFIMRWLRWRPAPAEPLTGEEKEIGRARDIGTQLDGARDRASLVETERNRVALAKAVKAALWVTDARLNLAVPELLQLAQRWAGKSKVRGKKWTPPEGVTQIESVDDPNSPSAAWVSKYHHWRLESECRPSILPEEIEEDMR
Ga0247708_1033033Ga0247708_10330332F067309MTNIIGRPNGDLLDVMLGDGADPEQAIINGSERRDGSEDDRRGDEPTAPKP
Ga0247708_1033340Ga0247708_10333401F051444MVALGPHTTMRGMAQMKKRIALLAAIAMMAGGVAGGVASAAIDEGPGRGNPDKNPAGKCPPGQNQDTSVGGLKKCR

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