NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028763

3300028763: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_1



Overview

Basic Information
IMG/M Taxon OID3300028763 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0134627 | Gp0312906 | Ga0302204
Sample NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size275415679
Sequencing Scaffolds34
Novel Protein Genes36
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
Not Available10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Mollisiaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliensis1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae1
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → fen → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000883Metagenome / Metatranscriptome849Y
F000987Metagenome / Metatranscriptome813Y
F004508Metagenome / Metatranscriptome435Y
F004812Metagenome / Metatranscriptome423Y
F008322Metagenome / Metatranscriptome335Y
F009089Metagenome / Metatranscriptome323Y
F019774Metagenome / Metatranscriptome227Y
F019814Metagenome / Metatranscriptome227Y
F021450Metagenome219N
F029425Metagenome188Y
F029737Metagenome187Y
F030179Metagenome / Metatranscriptome186Y
F031772Metagenome181Y
F033047Metagenome / Metatranscriptome178Y
F044217Metagenome155Y
F053674Metagenome141Y
F055309Metagenome139Y
F065810Metagenome / Metatranscriptome127Y
F074318Metagenome / Metatranscriptome119Y
F074396Metagenome / Metatranscriptome119Y
F076572Metagenome118Y
F077208Metagenome / Metatranscriptome117Y
F084877Metagenome / Metatranscriptome112N
F087844Metagenome110N
F089876Metagenome108Y
F096161Metagenome105N
F102310Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0302204_1003985All Organisms → cellular organisms → Bacteria3986Open in IMG/M
Ga0302204_1007225Not Available2824Open in IMG/M
Ga0302204_1008135All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2629Open in IMG/M
Ga0302204_1011539All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Mollisiaceae2138Open in IMG/M
Ga0302204_1014920Not Available1831Open in IMG/M
Ga0302204_1022037All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1441Open in IMG/M
Ga0302204_1024695All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1345Open in IMG/M
Ga0302204_1033720All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1104Open in IMG/M
Ga0302204_1045027All Organisms → cellular organisms → Bacteria918Open in IMG/M
Ga0302204_1053045All Organisms → cellular organisms → Bacteria828Open in IMG/M
Ga0302204_1055759All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium803Open in IMG/M
Ga0302204_1058312All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliensis781Open in IMG/M
Ga0302204_1058654All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium778Open in IMG/M
Ga0302204_1063472Not Available739Open in IMG/M
Ga0302204_1075264All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes665Open in IMG/M
Ga0302204_1077886Not Available651Open in IMG/M
Ga0302204_1078332All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens649Open in IMG/M
Ga0302204_1080876Not Available636Open in IMG/M
Ga0302204_1083534All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium623Open in IMG/M
Ga0302204_1084086Not Available620Open in IMG/M
Ga0302204_1086107All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Candidatus Methylospira → Candidatus Methylospira mobilis611Open in IMG/M
Ga0302204_1089197All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
Ga0302204_1090874All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae592Open in IMG/M
Ga0302204_1097868All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
Ga0302204_1101041Not Available554Open in IMG/M
Ga0302204_1103041Not Available548Open in IMG/M
Ga0302204_1104481All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium543Open in IMG/M
Ga0302204_1104911All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis542Open in IMG/M
Ga0302204_1109718All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
Ga0302204_1114193Not Available514Open in IMG/M
Ga0302204_1114962All Organisms → cellular organisms → Bacteria512Open in IMG/M
Ga0302204_1115890Not Available510Open in IMG/M
Ga0302204_1117470All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium506Open in IMG/M
Ga0302204_1118400All Organisms → cellular organisms → Bacteria504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0302204_1003985Ga0302204_10039853F077208MKALTILSVFILLFISCQRSDKKVISAEFKVNRSLLSDSSFASRTGFRINPPKNWSKTENYNSEVQNKVLYRMDNELLAIYKSDSTNCALIISELPETNFDIIRGLLDKSNSYPIRDSIWTNVQSSVFRYKTYEIIQIVSQNSNLIVFKLLTHRLSELYELDYIIPRSEININMQSVESSIGSLN
Ga0302204_1007225Ga0302204_10072253F102310MSIGWLKCVPAVLLPHSHCRSTTANAPASRQMPIASVVMCKRKKTEKQKNRTKNDMDSIIEKSRNINKNFTEDIIEFYHENQSDFDNFDNINEIETIEEIILIKQKYCEALESKAHYKELTVVLKHIFILLTKIKSKSQKHDSYYERALFYEGIVLGRQEKYSQSNHRFKELLIIDPINETYKNWYQSNKEKKFENIKSSLEGIVTFITVFITLLGSYIFGKTYTTILIIGFVLFIGTFVYTRVNRKKTT
Ga0302204_1008135Ga0302204_10081351F076572MKKLIICLFVVFVFIGCTTTSTPTCEQDYTFRMEFTNGSNDPYDLYINDKFQQIMGAKSKVTYDIPAGYWSAEVVQRSGYTTYQIDNVYSNTYESCTEYYIVF
Ga0302204_1011539Ga0302204_10115392F033047MKIIQTTKKYIKKFLVNFTLAKLLGALFTIIIVSLIKYCISGNLHIEYSEFXNNVGIGLLGXTINTGTIGXLTDYLGIKGINFNLNQFLNGYGAKYTMGGGDVNSSEFKPKLYYAMDSDQESGPSREIDKGKGIDRGYTESVNEGISEAKPLDKGKGIDRRVHPLSLAEVAPPTEPHMVTXSRVFPGIDPASVFFPKKINPGPGFNVPGGEVPIRDDICKHIDYNYHILKQFKTMDLKTAIEQRNNYLKYIEVLNQKASYAQDVLSKQPEVPTNDYQYRLRKQILTDLDSLSSQKVRAEAKATLINSRIEFIQINRKPDE
Ga0302204_1014920Ga0302204_10149203F087844MRKVIQLCLVTFTLLFPLSTLHAQGRNIHFFGSYDRSFGNISTSVSSSLGDIEHDEISKLKNGSVNQFELGAFINSFGMGIIHNSYAADATTTYQNYDMNHDGLLENGMLGDKLRLKFTGLEVLYKKAILGSRFDVLGRIALGIQSYSIDKTTENSDNNPADNYQTLTGSIFTGLIGVGFDYRINKIVSVGIETSVLPGKYKKLKDKTSDSYIYEDNVS
Ga0302204_1022037Ga0302204_10220372F096161WRLKLSCLSDKGASLDGFSQLSVSFSIEADAVLTFLLTFCGKTKSKSGFGAEAPIKQNNF
Ga0302204_1024695Ga0302204_10246951F021450VTNSTHISMKKTISLLALLLLFSIEIQAQVTNVLNNFYTVWIKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIAAFIMAG
Ga0302204_1033720Ga0302204_10337202F029425VSGHDEIVSVTSKKQGTRASADSANDAVPGDETVRMPQHFINGTEFKVIELGIVYKSVLALAQAIN
Ga0302204_1045027Ga0302204_10450272F076572IGCAKKDATAPNCEQDQTFSMEFTNGTDNPYDLYINDQFQQIMIAKSKVTYDIPAGYWSAEVVQRSGYTTSPTDKVYSNTYESCTNYYIVF
Ga0302204_1053045Ga0302204_10530452F096161RLKLSCLSDEGASLDGFSQLNASFSSEAGAVLTFLLTFCVKTKSKSGFGAEAPI
Ga0302204_1055759Ga0302204_10557592F076572FTFVGCTTTSTPTCDQDYTFRMEFTNGSNDPYDLYINDKFQQIMGAKSKVTYDIPAGYWSAEVVQRSGYTTYQIDNVYSNTYESCTEYYIVF
Ga0302204_1058312Ga0302204_10583122F084877GGLRVAHLTWTRKREGTTAWWESVERCEGVDGAAAQGPCDMAKTRLFEAQFPVMEMCILRRTTPGAEPPASGESPLLRPNPSGWWAVSNELTQGNGKAAYVTLDTSNARGIRDHLRGASPTVTECQ
Ga0302204_1058377Ga0302204_10583771F053674MKKVLIVIILFMAVLAVNAQTTKTTDTKEKGVRTSVLVADLQQPITDNVAKDYVGYTIKEAV
Ga0302204_1058654Ga0302204_10586541F089876MDNPKLKGDKSTIDFIENKKNEMKKSQYRERFDTLISEIKQNLMNTNVSYGQKLYEKSGWGSMVFYNKMANGAYDINVYPQKLTDRDQNRSGVPVSQEPIAFSKIMIATSVLAGKLPDATVIADDKVYGKAMYELWKRNWSMTGANGSNTLMITYQNLFTYGWAAWRVYPRRVQTKRNGVDKILFDDIYREPLDPERTWLGIGFNNGDVWSQTEVYYEKDMQKDLFYEMYPESKKNKKK
Ga0302204_1063472Ga0302204_10634721F076572MKKLLICLFVVFLAIGCAKKDATAPNCEQDQTFSMEFTNGTDNPYDLYINDQFQQIMIAKSKVTYDIPAGYWSAEVVQRSGYTTSPTDKVY
Ga0302204_1068260Ga0302204_10682601F044217AGYSGQRSAELLVAVASGAQNQQVRLAALQALVDRKDAARVSRLSELILPTENLPMRQALANAVYRTGCSVECIRNILYFEERMWRGDRPAEEIEPNPPKELSEKEQELQTALDEVLRKNKPALGAVLERFYGLAGPFPSPFAVEVVSRLGLTEACPLLMRTYLTVSENVKASPEYKNVADAVKKLGCEGRRVPSQP
Ga0302204_1075264Ga0302204_10752642F019814VSPFEGGVVGTIDYLIYTVFYFPTGVVDSLISSYLY
Ga0302204_1077886Ga0302204_10778861F102310MNNIIENSHKIDKDYSEEIIEFYRENLSYFDNFDSISEIDTIEEIILIKQKYCEALESKAHYKELTVILKHLFILLEKIKSKSQKYDNYYERALFYEGIVFGRQEKYSESNRRFKELITIDPSNESYKNWYQSNKKKIFDKRLSLSKNIVMITTVFTTLFGNYIFGHFNFQIMIFVF
Ga0302204_1078332Ga0302204_10783322F065810IDDILYLLKSNPVERDNLLAILYSQVLSLQNNLSVNFFDIWIHEIYINEISKVNKFLTNDSQNFEQFTYITIKLLYKTRIPIKKPESLW
Ga0302204_1080876Ga0302204_10808762F031772MCTYKSSHGIKKLAANGTAVEGVCVTGAASRILVPVVGSEAVPVTSRYGAIFAITVREGFITIAVQVDC
Ga0302204_1083534Ga0302204_10835341F004812MHLRTMPIFSLVNYIPVIATVVTTILSVVLARATLRYAEASDKSLALAREEFEREWSPELHIKLEKISSSEIKLIVTNLARISVLLQMVQVRKLAQAVPS
Ga0302204_1084086Ga0302204_10840861F087844NTTSAQSRSIHFFGSYDRSFGNLIASVSSSLGNIEQDEVSKLKNGSVNQFELGAFINSFGLGIIHNTYSTNATTNFENYDIDRDGRLDNGQLNDKLSLKFTGLEVLYKKAVFSSRFDVLWKIAFGIQSYSIDKRTQFSNDYYQRDDTQTLTGSIFTGLIGAGFDYHINKILSVGIETSLLPGKYKKLKDKASDYYTYEDNVSRLST
Ga0302204_1086107Ga0302204_10861072F055309MATGSCAFSKKGCLLARDTLVLNRAKPVARARLRQIKSVVAPLSDFHSLQYANNVRQPMTANSLLTLTQSRSQRINPQSLCAAE
Ga0302204_1089197Ga0302204_10891971F009089IRYPSFEEWKGLAAQCDETAHLTARERKARASAKLVHPDRLTEAATRYMDCEALAYWARQALERGAEPPPEVVRELERRCPGYLDAGLKARAQDASAATQEWQRLMLWIADHFFQDAQTEGWFEAILIQVRSHPRAIRTMEYADHCDEVWISELPSPYPSFEDWRREADSYVDLDD
Ga0302204_1090874Ga0302204_10908741F029737VTEFQFIEELEASRKSFEKLNYIFIRDMHKYIRKSMVYDSKFFKTILNFSANITLTAAWIKLLKDFNSDKYNNILRFSTDFNHSTGVPGAIKKSAR
Ga0302204_1097868Ga0302204_10978681F000987SAEQLAELFHHYHQALAPDFGASASRDSETWSDVPQQEKSRMVAAARLALLELHARVDSNLHSRRYFAKPGEAEWGC
Ga0302204_1101041Ga0302204_11010411F019814GLNEILHKKISPPFEGGVVGTIDYLIFRVFYSPTGVVDSLISSFLYLDETQKSLLKEKS
Ga0302204_1103041Ga0302204_11030412F019774VPGARFARVVVVPVPAIDPGLRVHVPVDGRPFNTTLPVGVAQVEGCVIVPIIGAGGATGAALMTTGADANEIHPSSLVT
Ga0302204_1104481Ga0302204_11044812F074396TKQLQKSKNMSHFSVRVIYENGKPVKDVGVMIDYGLFGGSEKKRTHSDGWVEFNNRENKSGYIWVDGHKMGNYSLENGRSYSFTI
Ga0302204_1104911Ga0302204_11049111F004508MRFTKFTGLLIPILVLMLGVFAMAGTNQMGIADSYRVNFSEPVRVADTLLPSGDYEIIHVMEGQDHIMVFRQLRTRKPVEVRAKCTLVPLAEKAPDSQKIYQLNAANERV
Ga0302204_1109718Ga0302204_11097181F008322KPAAPVAVQFLKGKLVSSDCSKPPDAILTILAGMKTYKLHAADFKTLLVVGEDQFSCEWRNRVVAVNYKPTGKNEGEVVSVELQ
Ga0302204_1114193Ga0302204_11141931F019814MNEILYKKVSPPFEGGVVGMIDYLIHTVFYFPTWVVD
Ga0302204_1114962Ga0302204_11149621F074318AAYITPSILLREGKVAEAREAVKHMAATPRYHRDLLEACLQVPLSAELERLAHVAETTQATELDPETWYYEGAIFGYCGKKQAALHRLQSAVEQNYCAYSNLLSDPLLAKLRAEPAFNKVLTAASACQEAVRSSSAPQSP
Ga0302204_1115890Ga0302204_11158901F053674MKRIIFVLVLIMSVLVINAQTTKTTGTSSKPTHTAVKVADLQKPITDNIAKDYAGFTIKEASSSTSNNVLNY
Ga0302204_1117470Ga0302204_11174701F000883DPGRSPMSGQVILYFDDQADALRFALAAGSVMAGDGFSATDDLMQETARVTRIRLDAVNAGKGKKPSPPERAA
Ga0302204_1118400Ga0302204_11184001F030179GYYEPLRHPTRPGRSLASCQLIPTAITAGASRVASGLLCVHAIAITPAGPMDLVRSSISIVSGLPCEKVRSAPAIVFSGPAQRSLTLWPVRSPSRLATLYIESSDSFVASSAVSIVTGWSEPVPGREFHPLKSTRLFTAHFFNNF
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