NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029124

3300029124: Human fecal microbial communities from mother in Denmark - 180_M



Overview

Basic Information
IMG/M Taxon OID3300029124 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193533 | Ga0169224
Sample NameHuman fecal microbial communities from mother in Denmark - 180_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size171917659
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.676097Long. (o)12.568337Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044554Metagenome154N
F047126Metagenome150N
F055715Metagenome138N
F078693Metagenome116N
F078822Metagenome116N
F081453Metagenome114N
F082887Metagenome / Metatranscriptome113Y
F087334Metagenome110N
F089054Metagenome109N
F090515Metagenome108N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169224_1000191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis47993Open in IMG/M
Ga0169224_1000730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales20099Open in IMG/M
Ga0169224_1005324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4775Open in IMG/M
Ga0169224_1006140All Organisms → cellular organisms → Bacteria4256Open in IMG/M
Ga0169224_1026715Not Available1271Open in IMG/M
Ga0169224_1027727All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1233Open in IMG/M
Ga0169224_1040681Not Available887Open in IMG/M
Ga0169224_1048273Not Available760Open in IMG/M
Ga0169224_1055418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74669Open in IMG/M
Ga0169224_1066534Not Available568Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169224_1000191Ga0169224_10001917F081453MYPFFLLAGENIVEKYISANPVCGTNIRAPELAVKGAPGRKCVQ
Ga0169224_1000730Ga0169224_10007301F055715LTKANEFDKINELLIERTAKKLKKTSKKFLTNEKLCGKINELIRVGTAKILDN
Ga0169224_1005324Ga0169224_10053242F078693MVLALVRGEERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0169224_1006140Ga0169224_10061403F089054MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLRLREILQINLSDITIIDVIPLP
Ga0169224_1026715Ga0169224_10267152F078822FLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0169224_1027727Ga0169224_10277272F090515ACQESVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0169224_1040681Ga0169224_10406812F082887MEKLKKIAKYATNILAIISALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK
Ga0169224_1048273Ga0169224_10482731F087334YPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSLLLAITFLYHPKDFFLYRAAALFEYREKHP
Ga0169224_1055418Ga0169224_10554183F047126KKMTNILQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169224_1063248Ga0169224_10632482F101356KTDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0169224_1066534Ga0169224_10665341F044554FIPVLCASIARLFPCRTEIARCLTLDFAISQYLFLSFPFSFRTNFAQTLFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
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