NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029892

3300029892: Fracture fluid microbial communities from borehole on the 26 level of Beatrix Gold Mine, Welkom, South Africa - Be326_2011_MF



Overview

Basic Information
IMG/M Taxon OID3300029892 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133327 | Gp0288270 | Ga0246235
Sample NameFracture fluid microbial communities from borehole on the 26 level of Beatrix Gold Mine, Welkom, South Africa - Be326_2011_MF
Sequencing StatusPermanent Draft
Sequencing CenterPrinceton University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size88034589
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFracture Fluid Microbial Communities From Borehole On The 26 Level Of Beatrix Gold Mine, Welkom, South Africa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracture Fluid → Fracture Fluid Microbial Communities From Borehole On The 26 Level Of Beatrix Gold Mine, Welkom, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeboreholefracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationSouth Africa: Welkom
CoordinatesLat. (o)-28.232288Long. (o)26.794365Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015419Metagenome / Metatranscriptome255Y
F025775Metagenome200Y
F080856Metagenome114Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0246235_100536All Organisms → cellular organisms → Archaea → Euryarchaeota25086Open in IMG/M
Ga0246235_101009All Organisms → cellular organisms → Bacteria12599Open in IMG/M
Ga0246235_101953All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans5207Open in IMG/M
Ga0246235_105906All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea1606Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0246235_100536Ga0246235_1005362F080856VEIDLFGKSVNAPKFLEVLEKQFDWFISYTLLLAEKHFEDPDTKKICIAVVFVGDYLWDIHTVRFEEVVYEKERTHRRKLPSPPPAVLEQVLKELRTAYEKAKELPPQVKRRLEEAQER
Ga0246235_101009Ga0246235_10100919F015419MEYKVQITDEAGNIRQYNVSRSSSSEDKSLNDFILEALQISEDKRKLPLKIQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMHITWRDGL
Ga0246235_101953Ga0246235_1019534F025775MKQFLTFQGFPMVVVTALIVWAWISILSVLIASFF
Ga0246235_105906Ga0246235_1059064F080856VMEIDLLGKSVNAPKFLDVLEKESDWFISYTLMLAEKHFEDPESKRIFIAVVLIGDYVWDIDTVRFEEVVYEKDRTKRRKIAAPTQTVLQNVLKELHAAYEKAKELPPQIRRRLEEAKAG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.